New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4059281	39 (0.720)	3 (0.060)	3/238	NT	6.4%	coding (1618/1638 nt)	pgm	phosphoglucomutase
	?	NC_002947	= 4059323	52 (1.050)					coding (1576/1638 nt)	pgm	phosphoglucomutase

GGCAGGCAGGCCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCAATCGC  >  NC_002947/4059141‑4059425                                                                                                                                             |                                                                                                                                                 ggcaggcaGGCCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACtt                                                                                                                                          >  1:102179/1‑149 (MQ=255) ggcaggcaGGCCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGAC                                                                                                                                                  >  1:130743‑M1/1‑141 (MQ=255) ggcaggcaGGCCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGAC                                                                                                                                                  <  2:130743‑M1/141‑1 (MQ=255)      gcaggcCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCt                                                                                                                                     >  7:159861/1‑149 (MQ=255)           ccaggcTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTtcctc                                                                                                                                >  3:257167/1‑149 (MQ=255)              ggcTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTccac                                                                                                                             <  3:15786/149‑1 (MQ=255)                   cGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGAc                                                                                                                        <  3:324452/149‑1 (MQ=255)                      tGGCGGCGCGGAGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCt                                                                                                                     <  8:159861/149‑1 (MQ=255)                              ctgcgTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATgc                                                                                                             <  5:10011/147‑1 (MQ=255)                                         aTGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGAGCCTCgtcgat                                                                                                  <  8:9592‑M2/149‑7 (MQ=255)                                            aggaggTTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACgaggcgcatttgcagcgtctggtggaggaagcacaagtgctggtcgatgaa                                                                                               <  2:217675‑M1/149‑52 (MQ=255)                                             ggaggGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGACTTCATCGACgaggcgcatttgcagcgtctggtgaaggaagcacaagtgctggtcgatgaag                                                                                              >  7:180472‑M1/1‑97 (MQ=255)                                                 ggTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCttt                                                                                          <  1:208313/149‑1 (MQ=255)                                                   tCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCg                                                                                        <  2:102179/149‑1 (MQ=255)                                                     cTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACgaggcgcatttgcagcgtctggtgaaggaagcacaagtgctggtcgatgatgccattgcc                                                                                      <  8:180472‑M1/149‑61 (MQ=255)                                                             gAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCt                                                                              >  5:202459/1‑149 (MQ=255)                                                                  aaTAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTg                                                                            >  1:318456/1‑146 (MQ=255)                                                                          tAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCtt                                                                  >  1:279087/1‑148 (MQ=255)                                                                                tAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTAcc                                                           <  1:64107/149‑1 (MQ=255)                                                                                 aaTTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTAccc                                                          >  2:185545/1‑149 (MQ=255)                                                                                        aTCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGgc                                                   >  2:36831/1‑149 (MQ=255)                                                                                        aTCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGgc                                                   >  3:275175/1‑149 (MQ=255)                                                                                         tCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGgcg                                                  >  7:46334/1‑149 (MQ=255)                                                                                                  aGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGaa                                         >  2:18267/1‑149 (MQ=255)                                                                                                      ccAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAAc                                        >  3:322000/1‑146 (MQ=255)                                                                                                      ccAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCa                                      <  4:322000/148‑1 (MQ=255)                                                                                                       cAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGc                                    >  3:30760/1‑149 (MQ=255)                                                                                                        aaGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGc                                    >  7:149811/1‑148 (MQ=255)                                                                                                          gCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCAt                                 >  6:324532/1‑149 (MQ=255)                                                                                                            ggTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTg                               <  4:275175/149‑1 (MQ=255)                                                                                                             gTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTgg                              <  5:324532/149‑1 (MQ=255)                                                                                                                tGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGcc                            <  8:46334/148‑1 (MQ=255)                                                                                                                tGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGcc                            <  7:9592/148‑1 (MQ=255)                                                                                                                  ttACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAAc                                        <  1:331415/134‑1 (MQ=255)                                                                                                                  ttACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAAc                                        >  2:331415/1‑134 (MQ=255)                                                                                                                       ggTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGt                          >  5:68043/1‑143 (MQ=255)                                                                                                                       ggTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGt                          <  6:68043/143‑1 (MQ=255)                                                                                                                        gTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGtca                        <  4:204432/144‑1 (MQ=255)                                                                                                                        gTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGtca                        >  3:204432/1‑144 (MQ=255)                                                                                                                            ggCAATGGCATCATCGACCAGCACTTGTGCTTCCTTCACCAGACGCTGCAAATGCGCCTCgtcgatgaagccattgcctgaccggtaacaaaccgcttggttctgtggtgtgatgtaaattagaattaatcttatttactccgccgcag               <  8:180472‑M2/149‑90 (MQ=255)                                                                                                                                   gcgaccgcGACCCGCACGTGTCCCTCCTCCCCCAGACGCCGCAACTGCGCCCCGTCGAGGAAGCCTTCGGCGCAGATCTCGCAGATCTCTTCAGCACCCGACGCGCGCGCCGCGAACCAGCCATAGGCCGTCATCACCTTAAGCCCGc         <  4:30760/141‑1 (MQ=255)                                                                                                                                   gCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGc         <  8:149811/148‑1 (MQ=255)                                                                                                                                    cTTCATCGACCAGCACTTGTGCTTCCTTCACCAGACGCTGCAAATGCGCCTCgtcgatgaagtcattgcctgaccggtaacaaaccgcttggttctgtggtgtgatgtaaattagaattaatcttatttactccgccgcaggaccctcc       >  7:180472‑M2/1‑52 (MQ=255)                                                                                                                                    cTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGcc        >  5:326100/1‑148 (MQ=255)                                                                                                                                     ttCATCGACCAGCACTTGTGCTTCCTCCACCAGCCGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCa       >  7:75618/1‑148 (MQ=255)                                                                                                                                     ttCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCgtcgatgaagccattgcctgaccggtaacaaaccgcttggttctgtggtgtgatgtaaattagaattaatcttatttactccgccgcaggaacctcct      <  2:217675‑M2/149‑99 (MQ=255)                                                                                                                                     ttCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCaa      >  7:80248/1‑149 (MQ=255)                                                                                                                                       cATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTTGCCGTCATCACCTTAAGCCCGCCAAt     <  1:185545/148‑1 (MQ=255)                                                                                                                                       cATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCAATc    >  3:98766/1‑149 (MQ=255)                                                                                                                                        aTCGACgaggctcatttgcagcgtctggtggaggaagcacaagtgctggtcgatgaagccattgcctgaccggtaacaaaccgcttggttctgtggtgtgatgtaaattagaattaatcttatttactccgccgcaggaccctcctcat   <  8:9592‑M1/149‑144 (MQ=255)                                                                                                                                         tCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCAATCGc  >  6:193165/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                 GGCAGGCAGGCCAGGCTCCGGTGGCGGCGCGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAAATGCGCCTCGTCGATGAAGCTTTCGGCGTAGATCTTGTAGATGTCTTCAGTACCCGACGGGCGCGCGGCGAACCAGCCATTGGCCGTCATCACCTTAAGCCCGCCAATCGC  >  NC_002947/4059141‑4059425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.