New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4359680 | 44 (0.810) | 4 (0.080) | 4/246 | NT | 8.5% | coding (276/1446 nt) | PP_3834 | hypothetical protein |
? | NC_002947 | = 4359703 | 45 (0.880) | coding (253/1446 nt) | PP_3834 | hypothetical protein |
GGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTG > NC_002947/4359536‑4359827 | ggTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACg > 5:121873/1‑148 (MQ=255) tgtCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAAc > 4:147232/1‑149 (MQ=255) tCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTg < 3:147232/149‑1 (MQ=255) tttCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCa < 6:1638/149‑1 (MQ=255) cACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGAc > 5:256084/1‑148 (MQ=255) gTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagc < 7:267648‑M2/149‑5 (MQ=255) aCCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGgtcggtgacaaaatccagttcgtcagcgc > 3:300604‑M1/1‑120 (MQ=255) aCCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagcgc < 1:60011‑M2/149‑7 (MQ=255) ccGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGgtcggtgacaaaatccagttcgtcagcgcct < 6:205725‑M1/149‑32 (MQ=255) ccGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGgtcggtgacaaaatccagttcgtcagcgcct > 5:205725‑M1/1‑118 (MQ=255) cGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGTGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCgg > 2:27297/1‑149 (MQ=255) gggCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCggg < 7:226370/149‑1 (MQ=255) atcttGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTc < 7:72504/146‑1 (MQ=255) aTTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCAc > 7:6002/1‑131 (MQ=255) aTTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCAc < 8:6002/131‑1 (MQ=255) tcgAGCCCACCGTCGACGATCAGCAGGCGGGCCTGTTGCCGGGCAATTGCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTCGGGTAGCAACGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa < 8:237509/147‑1 (MQ=255) gAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTACTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCAACGACCATCGCAGGGTc > 8:72504/1‑144 (MQ=255) aGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCTGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaagaa < 3:13863/149‑1 (MQ=255) acCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGgtcggtgacaaaatccagttcgtcagcgcctttgataccctagagc < 4:300604‑M1/149‑47 (MQ=255) tCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGt < 8:267648/149‑1 (MQ=255) gacgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTg < 6:256084/148‑1 (MQ=255) cgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGAc < 1:3584/149‑1 (MQ=255) gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTGCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGAtt > 1:41084/1‑106 (MQ=255) gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGAtt < 2:41084/106‑1 (MQ=255) gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGc > 1:153800/1‑142 (MQ=255) gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGc < 2:153800/142‑1 (MQ=255) tCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAgg > 2:73133/1‑149 (MQ=255) gcagGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTAc > 7:251999/1‑149 (MQ=255) agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCATAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg < 5:64113/149‑1 (MQ=255) agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg < 4:338058/149‑1 (MQ=255) agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg > 3:142350/1‑149 (MQ=255) ggCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTgg < 2:60011/149‑1 (MQ=255) ggCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCCGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACa < 8:251999/149‑1 (MQ=255) gCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCg > 5:240097/1‑149 (MQ=255) gCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGa < 6:121873/149‑1 (MQ=255) tCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCt > 5:166628/1‑149 (MQ=255) tGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAg > 8:148953/1‑149 (MQ=255) gcgcAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGc < 4:142350/148‑1 (MQ=255) tgCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGccac > 6:38620/2‑149 (MQ=255) gCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGccac > 5:119581/1‑148 (MQ=255) accaccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc > 5:46042/1‑143 (MQ=255) accaccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc < 6:46042/143‑1 (MQ=255) caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa > 6:318244/1‑149 (MQ=255) accGCAGCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCAc < 6:240097/149‑1 (MQ=255) aTCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACACGCTCAGCAAAGTGGCCACCAGCACGCGac < 1:27297/149‑1 (MQ=255) aGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGaccacc > 2:98253/1‑149 (MQ=255) cccGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGc > 5:47601/1‑149 (MQ=255) gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggt < 4:300604‑M2/149‑104 (MQ=255) gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcacg > 7:62590/1‑149 (MQ=255) ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTgg < 1:327269/145‑1 (MQ=255) ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTgg > 2:327269/1‑145 (MQ=255) ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGAGACCACCGCCACGCACGTGGCCGc > 6:287042/1‑149 (MQ=255) aGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgg < 6:205725‑M2/149‑119 (MQ=255) aGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgg > 5:205725‑M2/1‑31 (MQ=255) gcgcTGgtcggtgacaaaatccagttcgtcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgggt < 1:60011‑M1/149‑144 (MQ=255) gcgcTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgggt > 3:300604‑M2/1‑29 (MQ=255) gcTGgtcggtgacaaaatccagttcgtcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgggtac < 7:267648‑M1/149‑146 (MQ=255) gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTg > 1:43228/1‑81 (MQ=255) gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTg < 2:43228/81‑1 (MQ=255) gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCCGGCCAGGTGAt > 2:322294/1‑149 (MQ=255) cTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGAtt > 8:49204/1‑149 (MQ=255) tGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTg > 1:301692/1‑149 (MQ=255) | GGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTG > NC_002947/4359536‑4359827 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |