New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4359680	44 (0.810)	4 (0.080)	4/246	NT	8.5%	coding (276/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	= 4359703	45 (0.880)					coding (253/1446 nt)	PP_3834	hypothetical protein

CACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCGG  >  NC_002947/4359556‑4359846                                                                                                                                                    |                                                                                                                                                cACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGAc                                                                                                                                                 >  5:256084/1‑148 (MQ=255)    gTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagc                                                                                                                                             <  7:267648‑M2/149‑5 (MQ=255)      aCCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagcgc                                                                                                                                           <  1:60011‑M2/149‑7 (MQ=255)         cGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGTGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCgg                                                                                                                                        >  2:27297/1‑149 (MQ=255)          gggCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCggg                                                                                                                                       <  7:226370/149‑1 (MQ=255)            atcttGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTc                                                                                                                                     <  7:72504/146‑1 (MQ=255)               tcgAGCCCACCGTCGACGATCAGCAGGCGGGCCTGTTGCCGGGCAATTGCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTCGGGTAGCAACGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa                                                                                                                                  <  8:237509/147‑1 (MQ=255)                 gAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTACTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCAACGACCATCGCAGGGTc                                                                                                                                     >  8:72504/1‑144 (MQ=255)                  aGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCTGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaagaa                                                                                                                               <  3:13863/149‑1 (MQ=255)                           tCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGt                                                                                                                      <  8:267648/149‑1 (MQ=255)                             gacgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTg                                                                                                                     <  6:256084/148‑1 (MQ=255)                               cgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGAc                                                                                                                  <  1:3584/149‑1 (MQ=255)                                gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGc                                                                                                                        >  1:153800/1‑142 (MQ=255)                                gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGc                                                                                                                        <  2:153800/142‑1 (MQ=255)                                  tCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAgg                                                                                                               >  2:73133/1‑149 (MQ=255)                                     gcagGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTAc                                                                                                            >  7:251999/1‑149 (MQ=255)                                       agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCATAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg                                                                                                          <  5:64113/149‑1 (MQ=255)                                       agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg                                                                                                          >  3:142350/1‑149 (MQ=255)                                       agGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTg                                                                                                          <  4:338058/149‑1 (MQ=255)                                        ggCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTgg                                                                                                         <  2:60011/149‑1 (MQ=255)                                            ggCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCCGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACa                                                                                                     <  8:251999/149‑1 (MQ=255)                                                    gCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCg                                                                                             >  5:240097/1‑149 (MQ=255)                                                         gCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGa                                                                                        <  6:121873/149‑1 (MQ=255)                                                               tCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCt                                                                                  >  5:166628/1‑149 (MQ=255)                                                                  tGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAg                                                                               >  8:148953/1‑149 (MQ=255)                                                                    gcgcAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGc                                                                              <  4:142350/148‑1 (MQ=255)                                                                              tgCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGccac                                                                   >  6:38620/2‑149 (MQ=255)                                                                               gCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGccac                                                                   >  5:119581/1‑148 (MQ=255)                                                                                 accaccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                      >  5:46042/1‑143 (MQ=255)                                                                                 accaccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                      <  6:46042/143‑1 (MQ=255)                                                                                   caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa                                                              >  6:318244/1‑149 (MQ=255)                                                                                    accGCAGCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCAc                                                             <  6:240097/149‑1 (MQ=255)                                                                                         aTCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACACGCTCAGCAAAGTGGCCACCAGCACGCGac                                                        <  1:27297/149‑1 (MQ=255)                                                                                             aGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGaccacc                                                    >  2:98253/1‑149 (MQ=255)                                                                                               cccGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGc                                                  >  5:47601/1‑149 (MQ=255)                                                                                                       gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggt                                          <  4:300604‑M2/149‑104 (MQ=255)                                                                                                       gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcacg                                          >  7:62590/1‑149 (MQ=255)                                                                                                              ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTgg                                       <  1:327269/145‑1 (MQ=255)                                                                                                              ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTgg                                       >  2:327269/1‑145 (MQ=255)                                                                                                              ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGAGACCACCGCCACGCACGTGGCCGc                                   >  6:287042/1‑149 (MQ=255)                                                                                                                      aGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgg                           <  6:205725‑M2/149‑119 (MQ=255)                                                                                                                      aGGCGCTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgg                           >  5:205725‑M2/1‑31 (MQ=255)                                                                                                                        gcgcTGACGAACTGGATTTTGTCACCGACcagcgcctttgataccctagagcaggacgggctggatgcggtggtgcggttgctgcgccaggaaattgcccggcaacaggccagcctgctgatcgtcgacggtgtgctcaatgcccgggt                         >  3:300604‑M2/1‑29 (MQ=255)                                                                                                                          gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTg                                                                                           >  1:43228/1‑81 (MQ=255)                                                                                                                          gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTg                                                                                           <  2:43228/81‑1 (MQ=255)                                                                                                                          gcTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCCGGCCAGGTGAt                       >  2:322294/1‑149 (MQ=255)                                                                                                                           cTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGAtt                      >  8:49204/1‑149 (MQ=255)                                                                                                                            tGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTg                     >  1:301692/1‑149 (MQ=255)                                                                                                                              aCGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGc                   >  2:171462/1‑149 (MQ=255)                                                                                                                                gAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGc                   >  1:60852/1‑147 (MQ=255)                                                                                                                                    tGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGAt             >  8:307903/1‑149 (MQ=255)                                                                                                                                    tGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGAt             >  5:231034/1‑149 (MQ=255)                                                                                                                                      gATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATgg           >  2:301557/1‑149 (MQ=255)                                                                                                                                        ttttGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTc         <  5:287042/149‑1 (MQ=255)                                                                                                                                             tCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTAc     <  7:148953/148‑1 (MQ=255)                                                                                                                                               aCCGACCAGCGCTGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCgg  >  3:260100/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                CACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCGG  >  NC_002947/4359556‑4359846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.