New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4430826 =	47 (0.870)	4 (0.080)	4/246	NT	7.7%	coding (596/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	4430872 =	51 (1.000)					coding (642/1068 nt)	PP_3925	hypothetical protein

CACCAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACC  >  NC_002947/4430681‑4430966                                                                                                                                                  |                                                                                                                                             cACCAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTg                                                                                                                                             >  6:234125/1‑147 (MQ=255) cACCAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTg                                                                                                                                             <  5:234125/147‑1 (MQ=255) cACCAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCa                                                                                                                                           >  1:77601/1‑149 (MQ=255)   ccAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGGCACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCAc                                                                                                                                          >  4:189111/1‑148 (MQ=255)            cTACACCGCCTGCGGCCTGGCCGACCCGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgc                                                                                                                                <  6:177765/149‑1 (MQ=255)              atccagtaggctaggcagttgcccaggtccatgagtgggtcgcccagggtggccatttcccagtccagcacaccgatgatgcgcatggggttgtccgcgtccaggatgacgttgtcgaaccggtagtcgttgTGCACGAAAAAATgccg                                                                                                                              <  7:140352‑M1/17‑1 (MQ=255)                acCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgccggc                                                                                                                            >  8:215520/1‑149 (MQ=255)                acCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgccggc                                                                                                                            >  4:317400/1‑149 (MQ=255)                   gCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGa                                                                                                                         <  3:317400/149‑1 (MQ=255)                          gCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGaccaccag                                                                                                                  >  7:248711/1‑147 (MQ=255)                                        ggCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATc                                                                                                      <  2:132004/147‑1 (MQ=255)                                         gCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTg                                                                                                   >  7:305521/1‑149 (MQ=255)                                         gCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTg                                                                                                   <  4:156073/149‑1 (MQ=255)                                          ccatgagtgggtcgcccagggtggccatttcccagtccagcacaccgatgatgcgcatggggttgtccgcgtccaggatgacgttgtcgaaccggtagtcgttgTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGc                                                                                                  <  4:95609‑M1/45‑1 (MQ=255)                                               agtgggtcgcccagggtggccatttcccagtccagcacaccgatgatgcgcatggggttgtccgcgtccaggatgacgttgtcgaaccggtagtcgttgTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACaa                                                                                              >  3:95609‑M1/100‑148 (MQ=255)                                               agtgggtcgcccagggtggccatttcccagtccagcacaccgatgatgcgcatggggttgtccgcgtccaggatgacgttgtcgaaccggtagtcgttgTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAAc                                                                                             >  8:140352‑M1/100‑149 (MQ=255)                                                  aGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAg                                                                                                           <  3:276192/132‑1 (MQ=255)                                                  aGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAg                                                                                                           >  4:276192/1‑132 (MQ=255)                                                  aGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGAc                                                                                          <  1:55837/149‑1 (MQ=255)                                                     gCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTAc                                                                                       <  3:221083/149‑1 (MQ=255)                                                      cTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTAcc                                                                                      >  4:43181/1‑149 (MQ=255)                                                         cGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGt                                                                                   <  7:215520/149‑1 (MQ=255)                                                                 gcCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGAACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAAc                                                                           <  8:248711/149‑1 (MQ=255)                                                                      aTCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGTGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCAt                                                                      >  5:322563/1‑149 (MQ=255)                                                                         gAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCt                                                                   >  3:214935/1‑149 (MQ=255)                                                                             gCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGTATCGTg                                                                                                   <  8:142450/113‑1 (MQ=255)                                                                                 gACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCgg                                                           <  2:77601/149‑1 (MQ=255)                                                                                    cAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGAc                                                         >  6:311535/1‑148 (MQ=255)                                                                                     aGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACaa                                                       <  8:178838/149‑1 (MQ=255)                                                                                            aTGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                 <  3:43181/148‑1 (MQ=255)                                                                                              gAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATgcg                                              >  2:333573/1‑149 (MQ=255)                                                                                                aaaaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGca                                            <  3:62977/149‑1 (MQ=255)                                                                                                  aaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGAcgc                                                             <  3:259/130‑1 (MQ=255)                                                                                                  aaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTACACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGcat                                           >  1:118166/1‑148 (MQ=255)                                                                                                  aaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGACGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGAcgc                                                             >  4:259/1‑130 (MQ=255)                                                                                                       cTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGca                                                                                                 >  2:134814/1‑89 (MQ=255)                                                                                                       cTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGca                                                                                                 <  1:134814/89‑1 (MQ=255)                                                                                                         gACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACCACGACTTCCGGTTCGCCAACGTCATCCTGGACGCGGGGAACCGCATGCGCATCATCGgtg                                   >  6:208826/1‑149 (MQ=255)                                                                                                          acacCGGATGCGCCACGCTTGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgt                                    <  6:155518/147‑1 (MQ=255)                                                                                                          acacCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgt                                    <  1:333573/147‑1 (MQ=255)                                                                                                              cGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGAAAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTg                              >  6:94258/1‑149 (MQ=255)                                                                                                                    cgcCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                        <  4:214935/149‑1 (MQ=255)                                                                                                                          gCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                       >  5:335237/1‑128 (MQ=255)                                                                                                                          gCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                       >  5:330357/1‑128 (MQ=255)                                                                                                                          gCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                       <  6:330357/128‑1 (MQ=255)                                                                                                                          gCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                       <  6:335237/128‑1 (MQ=255)                                                                                                                          gCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCACATGCGCATCATCGGTGTGCTGGACTGGGAAATg                  <  1:195152/149‑1 (MQ=255)                                                                                                                            tGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGc                >  8:256891/1‑149 (MQ=255)                                                                                                                               gAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGc                                >  6:17574/1‑130 (MQ=255)                                                                                                                               gAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGc                                <  5:17574/130‑1 (MQ=255)                                                                                                                                aaaCGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCAcc            >  2:130214/1‑149 (MQ=255)                                                                                                                                         ccGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGAc   <  5:311535/149‑1 (MQ=255)                                                                                                                                          cGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGAcc  >  7:271528/1‑149 (MQ=255)                                                                                                                                            ccTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATc                                                                     <  6:346063/80‑1 (MQ=255)                                                                                                                                            ccTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATc                                                                     >  5:346063/1‑80 (MQ=255)                                                                                                                                                  |                                                                                                                                             CACCAGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACC  >  NC_002947/4430681‑4430966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.