New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4509677 = | 57 (1.050) | 3 (0.060) | 3/246 | NT | 5.3% | coding (385/1281 nt) | serS | serine‑‑tRNA ligase |
? | NC_002947 | 4509734 = | 54 (1.060) | coding (328/1281 nt) | serS | serine‑‑tRNA ligase |
GCGCCAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGTTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGCCGGCAGCCAGTTCG > NC_002947/4509530‑4509822 | gcgcCAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGc > 5:21188/1‑149 (MQ=255) ggccaagggcgaagacatcgccccgctgatggctgacgtcgagcgcatggccaacgaactggctgccggcaaggctgagctggacgccattcaggccgagctggatggcatcctgctgaccattcccaacctgccggacgccaGCGTGc < 4:291744‑M1/6‑1 (MQ=255) cAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGc < 6:10176/149‑1 (MQ=255) cAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGc < 7:231799/149‑1 (MQ=255) cAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGc > 2:132289/1‑149 (MQ=255) ggCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGccc > 6:29438/1‑148 (MQ=255) gACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACt < 3:248521/149‑1 (MQ=255) aCGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACtt < 2:306147/149‑1 (MQ=255) gCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGAc > 2:319927/1‑149 (MQ=255) ccGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTg < 6:21188/149‑1 (MQ=255) ccGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTg < 1:225556/149‑1 (MQ=255) cGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTgt < 1:156447/149‑1 (MQ=255) aCGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCtt < 5:29438/149‑1 (MQ=255) aCGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCt > 5:649/1‑148 (MQ=255) aCGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGGCGTCtt < 7:95135/149‑1 (MQ=255) cagcaAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGgcg < 4:56514/149‑1 (MQ=255) cagcaAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGGCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGgcg < 1:42635/149‑1 (MQ=255) caAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTgtcgtc < 6:62634/136‑1 (MQ=255) caAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTgtcgtc > 5:62634/1‑136 (MQ=255) aaaCGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGAc > 6:42681/1‑149 (MQ=255) aaaCGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGAc < 1:132289/149‑1 (MQ=255) aaaCGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGAc < 8:205070/149‑1 (MQ=255) aCGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCg < 6:273875/149‑1 (MQ=255) gCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAAc > 6:77977/1‑106 (MQ=255) gCACCGGACAGCTTGGCAGCCGCTACGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCAc > 6:106384/1‑149 (MQ=255) cgaactggctgccggcaaggctgagctggacgccattcaggccgagctggatggcatcctgctgaccattcccaacctgccggacgccaGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTgg > 3:32605‑M1/90‑149 (MQ=255) aCAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCg > 7:11566/1‑149 (MQ=255) gCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGtgc > 1:105333/1‑147 (MQ=255) cTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCg > 4:130203/1‑149 (MQ=255) cTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCg > 3:181921/1‑149 (MQ=255) ctgccggcaaggctgagctggacgccattcaggccgagctggatggcatcctgctgaccattcccaacctgccggacgccaGCGTGCCCCAACGGCGCACTTCGACGTTGTCGTCTTCACTGGCGCCGACCg < 8:231351‑M1/51‑1 (MQ=255) ctgccggcaaggctgagctggacgccattcaggccgagctggatggcatcctgctgaccattcccaacctgccggacgccaGCGTGCCCCAACGGCGCACTTCGACGTTGTCGTCTTCACTGGCGCCGACCg > 7:231351‑M1/82‑132 (MQ=255) gCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTc < 5:138868/143‑1 (MQ=255) gCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTc > 6:138868/1‑143 (MQ=255) cAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTg > 8:130327/1‑107 (MQ=255) cAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTg < 7:130327/107‑1 (MQ=255) cGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTgg < 8:252603/149‑1 (MQ=255) ttCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGAAGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGaa > 4:8929/1‑149 (MQ=255) cAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTcagc < 5:42681/148‑1 (MQ=255) cAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTcag > 2:83830/1‑147 (MQ=255) gCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGa < 3:130203/149‑1 (MQ=255) gCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCAt > 7:268438/1‑149 (MQ=255) tttCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGCCCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGc > 3:268623/1‑149 (MQ=255) aGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATg > 2:264373/1‑132 (MQ=255) aGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATg < 1:264373/132‑1 (MQ=255) ggCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGaa < 3:8929/149‑1 (MQ=255) gCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAAt < 8:11566/149‑1 (MQ=255) ccACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTgg < 8:142914/111‑1 (MQ=255) ccACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTgg > 7:142914/1‑111 (MQ=255) ccACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATg < 1:319927/149‑1 (MQ=255) agaTGTTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACTCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGTGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGc < 4:177382/147‑1 (MQ=255) aTGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGt > 5:235193/1‑149 (MQ=255) tGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGc < 2:234191/92‑1 (MQ=255) tGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGc > 1:234191/1‑92 (MQ=255) tGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCg > 5:59982/1‑140 (MQ=255) tGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCg < 6:59982/140‑1 (MQ=255) gccGAAGGCGTTCGACTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCt > 3:173464/3‑149 (MQ=255) aaGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGcc > 6:121527/1‑149 (MQ=255) tCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGc > 3:314327/1‑145 (MQ=255) tCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGc < 4:314327/145‑1 (MQ=255) cGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGCCGGCAGCCa < 3:152879/149‑1 (MQ=255) cGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGCCGGCAGCCa < 6:235193/149‑1 (MQ=255) cGGCGTGCCCCAACGGCGCACTTCGACGCTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGCCGGCAGCCAGTTCg < 4:181921/148‑1 (MQ=255) | GCGCCAGGGCGCGGTGCAGACGGGCAACCGGACCACGCAGCACAGCAAAACGGGCACCGGACAGCTTGGCAGCCGCTTCGAAGTCCAGGCCACCGCTGATTTCACCGAGGGCCACATGGTCCTTGATTTCGAAGTCGAACGCCTTCGGCGTGCCCCAACGGCGCACTTCGACGTTGTCGTCTTCACTGGCGCCGACCGGCACGCTGGCGTCCGGCAGGTTGGGAATGGTCAGCAGGATGCCATCCAGCTCGGCCTGAATGGCGTCCAGCTCAGCCTTGCCGGCAGCCAGTTCG > NC_002947/4509530‑4509822 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |