New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4855936	36 (0.670)	3 (0.060)	3/246	NT	6.0%	coding (715/807 nt)	PP_4270	hypothetical protein
	?	NC_002947	= 4855996	60 (1.170)					coding (775/807 nt)	PP_4270	hypothetical protein

GCAATTGCAAGCGCTGGCGGTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAA  >  NC_002947/4855800‑4856082                                                                                                                                         |                                                                                                                                                   gcaATTGCAAGCGCTGGCGGTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAg                                                                                                                                        <  7:126074/149‑1 (MQ=255) gcaATTGCAAGCGCTGGCGGTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAg                                                                                                                                        >  5:123622/1‑149 (MQ=255)                 gCGGTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGa                                                                                                                        <  5:328963/149‑1 (MQ=255)                   ggTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACa                                                                                                                      <  6:123622/149‑1 (MQ=255)                     tGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAg                                                                                                                     >  3:83486/1‑148 (MQ=255)                                        ggggTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTggcccggccc                                                                                                  >  1:162883/1‑148 (MQ=255)                                         gggTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCtgggtatttcgggccgggccacagacatactgtccgggtcgcccgtcgctt                                                                                                 >  3:296025‑M1/1‑97 (MQ=255)                                         gggTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGa                                                                                                <  4:83486/149‑1 (MQ=255)                                           gTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGaaa                                                                                              >  6:164825/1‑149 (MQ=255)                                           gTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGaaa                                                                                              >  2:173686/1‑149 (MQ=255)                                                       cAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAgcaaaa                                                                                  <  4:282211‑M2/149‑7 (MQ=255)                                                            aTCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCtgggtatttcgggccgggccacagacatactgtccgggtcgcccgtcgcttcataccgctgcaaaatccgc                                                                             <  4:296025‑M1/149‑72 (MQ=255)                                                               cGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCtgggtatttcgggccgggccacagacatactgtccgggtcgcccgtcgcttcataccgctgcaaaatccgctct                                                                          <  4:232089‑M1/149‑75 (MQ=255)                                                                         gACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACAcagccagc                                                                >  7:63147/1‑149 (MQ=255)                                                                          acacAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAgcg                                                               >  1:165707/1‑149 (MQ=255)                                                                           cacaAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGaa                                                                                                                                         <  3:151490/74‑1 (MQ=255)                                                                           cacaAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGaa                                                                                                                                         >  4:151490/1‑74 (MQ=255)                                                                              aaGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAAc                                                           <  2:165707/149‑1 (MQ=255)                                                                               aGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAAc                                                           >  3:120604/1‑148 (MQ=255)                                                                                gggCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGACCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCACAACt                                                          >  7:258815/1‑148 (MQ=255)                                                                                 ggCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTaa                                                        >  7:132983/1‑149 (MQ=255)                                                                                         cGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTg                                                <  4:120604/149‑1 (MQ=255)                                                                                           ggCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCt                                              >  7:237468/1‑149 (MQ=255)                                                                                                               aGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCaa                                                            >  1:72301/1‑115 (MQ=255)                                                                                                               aGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCaa                                                            <  2:72301/115‑1 (MQ=255)                                                                                                                     gggAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGt                    >  7:268645/1‑149 (MQ=255)                                                                                                                          aTAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCtt                 >  1:223078/1‑147 (MQ=255)                                                                                                                          aTAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCtt                 <  2:223078/147‑1 (MQ=255)                                                                                                                          aTAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGc               >  3:94835/1‑149 (MQ=255)                                                                                                                            agagCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAgcaaaatccgctctatctcccccgactgcttcatccttaccaacgcccgcaacagcccttgtgtcggtatcgccg             <  4:232089‑M2/149‑76 (MQ=255)                                                                                                                            agagCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGCCACACAGCCAGCGCAACTAACTGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCt              >  4:107592/1‑148 (MQ=255)                                                                                                                             gagCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTc             >  2:27704/1‑148 (MQ=255)                                                                                                                              agCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCaa           >  2:152293/1‑149 (MQ=255)                                                                                                                               gCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAgcaaaatccgctctatctcccccgactgcttcatccttaccaacgcccgcaacagcccttgtgtcggtatcgccggat          <  4:296025‑M2/149‑79 (MQ=255)                                                                                                                               gCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAAt          >  5:18891/1‑149 (MQ=255)                                                                                                                               gCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAAt          >  6:111235/1‑149 (MQ=255)                                                                                                                                cGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAAtt         >  3:199866/1‑149 (MQ=255)                                                                                                                                  gATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTc       >  2:217484/1‑149 (MQ=255)                                                                                                                                   aTTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAAt          >  5:189798/1‑145 (MQ=255)                                                                                                                                   aTTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAAt          <  6:189798/145‑1 (MQ=255)                                                                                                                                   aTTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCt      <  4:199866/149‑1 (MQ=255)                                                                                                                                    ttttGCtgggtatttcgggccgggccacagacatactgtccgggtcgcccgtcgcttcataccgctgcaaaatccgctctatctcccccgactgcttcatccttaccaacgcccgcaacagcccttgtgtcggtatcgccggatcgttg     <  4:282211‑M1/149‑144 (MQ=255)                                                                                                                                    ttttGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTa     <  2:14340/149‑1 (MQ=255)                                                                                                                                      ttGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTaa    <  5:111235/148‑1 (MQ=255)                                                                                                                                      ttGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTaa    <  8:63147/148‑1 (MQ=255)                                                                                                                                      ttGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCACAACTGTCTTGCTCAATTTCTaa    <  8:237468/148‑1 (MQ=255)                                                                                                                                        gCAGCTGTATGAAGCGACGTGCGACCAGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTaaaa  <  8:132983/148‑1 (MQ=255)                                                                                                                                        gCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTaaaa  <  5:164825/148‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                   GCAATTGCAAGCGCTGGCGGTGCTGGACGAACAGGATTTGGGGTGCATGGTGCGCAACGATCCGGCGATACCGACACAAGGGCTGTTGCGGGCGTTGGTAAGGATGAAGCAGTCGGGGGAGATAGAGCGGATTTTGCAGCGGTATGAAGCGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAA  >  NC_002947/4855800‑4856082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.