| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6077821 = | 42 (0.780) | 5 (0.110) | 5/212 | NT | 14.2% | intergenic (‑123/+115) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| ? | NC_002947 | 6077921 = | 26 (0.590) | intergenic (‑223/+15) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter | |||||
GCCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCA > NC_002947/6077673‑6077967 | ctttggcgggctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctac < 1:239415‑M1/1‑1 (MQ=255) tggcgggctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCt > 7:87324‑M1/146‑147 (MQ=255) ggcgggctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTgg > 6:26128‑M1/145‑148 (MQ=255) gcgggctgacgcctttggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGc > 3:179796‑M1/144‑148 (MQ=255) cgggctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCct > 4:196233‑M1/143‑149 (MQ=255) cgggctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCct > 7:302067‑M1/143‑149 (MQ=255) gctgacgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCtt > 3:55715‑M1/140‑149 (MQ=255) acgctgatggtggtgaccgaactgctgaaggtgagcccgatggcgccttcctactacgtggcaggcctgtgcgccgtcggtctagccgtgtgcctgtaccttctcgccaacaagcgcttatctgcgcttcggctaCTGGCCTCTTcg > 2:257649‑M1/136‑147 (MQ=255) acgccgatggtggtgaccgcactgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTcgc > 3:52434‑M1/136‑148 (MQ=255) cTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCgg < 5:28750/149‑1 (MQ=255) ttCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGCCAATTGGATGAAAGGCCATCACTGGAACCAGGTCTGGCCTCTTCGCGGc > 4:273865/1‑149 (MQ=255) ttCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGc > 7:268241/1‑149 (MQ=255) tggtgggtaccgcactgctgaagttgagcccgatggcgccttcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTaaa > 8:308744‑M1/129‑148 (MQ=255) tCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGc > 4:148031/1‑131 (MQ=255) tCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGc < 3:148031/131‑1 (MQ=255) tCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGcc > 5:132404/1‑149 (MQ=255) cATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGcc < 5:230628/148‑1 (MQ=255) ggtCCTAGCAGGAATATTGG‑‑‑GTTGGTTGGAACGGGGCGTTGTATCGGGAGGCAGAATGATTACGATATGACTTGATTGTGACAATTGTATGAAAGGCCATCAGTGGAATCAGGTCTGGCCTCTTCGCGGCTAATGCCGTTGCTTCA‑g < 4:118088/145‑1 (MQ=255) cTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑g > 4:320588/1‑149 (MQ=255) tgctgaaggtgagcccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑gggg < 4:256987‑M1/36‑1 (MQ=255) cTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑gggg < 3:320588/149‑1 (MQ=255) cTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑gg < 5:335439/147‑1 (MQ=255) cAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGttt < 6:154655/149‑1 (MQ=255) gAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGca > 3:189463/1‑149 (MQ=255) tatTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAg < 8:268241/149‑1 (MQ=255) ttGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTCGAAGCAGGACTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGAACATGc > 8:290586/1‑149 (MQ=255) cccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTcgc < 2:174927‑M1/13‑1 (MQ=255) cccgatggcgcctgcctactacgtggcaggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTcgc > 1:174927‑M1/101‑113 (MQ=255) gatggaACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGa < 4:189463/149‑1 (MQ=255) gaACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGacac < 7:290586/148‑1 (MQ=255) gCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCt < 6:262116/149‑1 (MQ=255) ccAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTg > 1:223849/1‑148 (MQ=255) aaGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAAc < 4:2356/143‑1 (MQ=255) aaGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAAc > 3:2356/1‑143 (MQ=255) aggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAAc < 6:210463‑M1/67‑1 (MQ=255) aggcctgtgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAAc > 5:210463‑M1/74‑140 (MQ=255) tgcgccgtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCtt > 2:239415‑M1/67‑148 (MQ=255) gtcggtctagccgtgggcctgtacctgctcgccaacaagcgctgatctgcgcttcggctaCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCcgc > 3:256987‑M1/61‑149 (MQ=255) tGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCcgcg > 4:268716/1‑148 (MQ=255) tACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAagag > 2:288258/1‑149 (MQ=255) tACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCGAACCTGTAGGAGCGGCGTTAGGCGCGAagag > 2:296520/1‑149 (MQ=255) gATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGc > 1:287062/1‑148 (MQ=255) atGACTTCATTGTTAAAATTGCATGAATGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCACGGCCTACACCTAACGTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCa < 6:132404/147‑1 (MQ=255) atGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAg > 5:87365/1‑148 (MQ=255) ttCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAg < 1:168247/89‑1 (MQ=255) ttCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAg > 2:168247/1‑89 (MQ=255) cAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAgcg > 2:45886/1‑144 (MQ=255) cAATTGGATGAAAGGCCATCACTGCAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCGGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGAt < 6:107782/149‑1 (MQ=255) aTTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTGAAGGCCGCCACCTCACCTGTAGGGGCGGCTTTTGCCGCGGAGAGGCCAGGTGCCGTAGCGCAGATcc > 8:313818/1‑148 (MQ=255) ggATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGc > 7:273029/1‑108 (MQ=255) ggATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGc < 8:273029/108‑1 (MQ=255) ggATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCa < 5:130920/127‑1 (MQ=255) ggATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCa > 6:130920/1‑127 (MQ=255) gATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACAGGGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAgcg > 3:243417/1‑149 (MQ=255) aTGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCt > 4:94180/1‑149 (MQ=255) tGAACGGCGAGCACTGGAAGCTGGGCGGCCAGCTTCGCGCCTAAAGCCGTTCCTCCT‑GGGGGTTTGCACAGGCCTCAAGGCCTACACCTACCCTGTAGGAGGGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCtt < 3:273865/149‑1 (MQ=255) acggCCATCAGTGGACGCCGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACC‑GGGGGTTGCCACCGCCCTCACGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCTGATCTGCGCttcgg < 2:223849/147‑4 (MQ=255) acgccaaTCACTGTACGCTGGTGGGGCCTCTTCGCGTAAAACGCGTTTCTTAGT‑GGGGTTTTCCACCGCCCTAATGGCCTACACATACCGTTTTGGTGGGGTTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCttgt < 2:287062/142‑1 (MQ=255) gcaaTCACTGTAAGCTGGTCTGGCCTCTTCGGGGCTAAAGCCGTTCCTACT‑GGGGGTTTGCACTGGCCTCAAGGCCTACACCTAACCTGTAGGAGCGGTTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCttgttg < 4:118194/144‑1 (MQ=255) gCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCttgttg > 3:118194/1‑147 (MQ=255) tGGAAGCAGGTCTGGCCTCTTAGCGGCTAAAGCCGTTTCTAAA‑GGGGGTTTGGACAGGCCGAAAGGCCGAAACCTTACCGGTATGAGCGGCTTTATCACCGCAGAGGGCAGTAGCCGCATCGCCGATCAGCGGGTGTTGGCGGGCAggg > 8:36051/1‑148 (MQ=255) gTCTGGCCTATTAGCGGCTAAAACCGTTACGACA‑GGGGGTTTTCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATACGCGCTTGTTGGCGAGCAGGTACACGCCCa > 2:186582/1‑149 (MQ=255) | GCCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACA‑GGGGGTTTGCACAGGCCTCAAGGCCGACACCTAACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCA > NC_002947/6077673‑6077967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |