New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1151173 =	53 (0.980)	5 (0.100)	5/248	NT	10.9%	intergenic (‑162/‑103)	gapA/edd	glyceraldehyde‑3‑phosphate dehydrogenase/phosphogluconate dehydratase
	?	NC_002947	1151229 =	31 (0.600)					intergenic (‑218/‑47)	gapA/edd	glyceraldehyde‑3‑phosphate dehydrogenase/phosphogluconate dehydratase

GGAATTACAAGATTATTCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTCGCGGCGCGGCCAGTGAAGGC  >  NC_002947/1151081‑1151377                                                                                                                                                     |                                                                                                                                                      ggAATTACAAGATTATTCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAggg                                                                                                                                                       >  4:310552/1‑149 (MQ=255)  cgttcgaccagccgctgggtgacctcaaggatgcgcggatgcatgtactggactccaggctaattgtaagggcggtttaccgagcatttccCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAgggg                                                                                                                                                      >  4:295079‑M1/92‑149 (MQ=255)      cgaccagccgctgggtgacctcaaggatgcgcggatgcatgtactggactccaggctaattgtaagggcggtttaccgagcatttccCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGaaa                                                                                                                                                   >  7:156889‑M1/88‑148 (MQ=255)       gaccagccgctgggtgacctcaaggatgcgcggatgcatgtactggactccaggctaattgtaagggcggtttaccgagcatttccCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑t                                                                                                                                                 >  8:244164‑M1/87‑148 (MQ=255)         aaGATTATTCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAggg                                                                                                                                                       >  6:193900/1‑141 (MQ=255)         aaGATTATTCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAggg                                                                                                                                                       <  5:193900/141‑1 (MQ=255)             ttattCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCgg                                                                                                                                           >  3:37444/1‑148 (MQ=255)                       gCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGccc                                                                                                                                 <  5:288855/148‑1 (MQ=255)                           aTAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTAc                                                                                                                             >  5:148480/1‑148 (MQ=255)                            tAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACa                                                                                                                            >  2:295570/1‑148 (MQ=255)                                   cAAGCCTTTTTAGGGGCAGTATTTTGGTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCt                                                                                                                    <  7:121627/149‑1 (MQ=255)                                    aaGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTg                                                                                                                   >  5:298999/1‑149 (MQ=255)                                     aGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTg                                                                                                                   >  4:75990/1‑148 (MQ=255)                                      gCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCtt                                                                                                                               <  8:36399/135‑1 (MQ=255)                                      gCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCtt                                                                                                                               >  7:36399/1‑135 (MQ=255)                                      gCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGa                                                                                                                 <  7:281406/149‑1 (MQ=255)                                          ttttAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTc                                                                                                              >  6:348474/1‑148 (MQ=255)                                           tttAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTc                                                                                                              <  2:190280/147‑1 (MQ=255)                                           tttAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAAACATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAATTGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTc                                                                                                              <  1:231107/148‑1 (MQ=255)                                            ttAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCTGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCa                                                                                                            <  3:310552/148‑1 (MQ=255)                                               gTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTAc                                                                                                        <  5:348474/149‑1 (MQ=255)                                                         tttGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCcgc                                                                                              <  1:295570/149‑1 (MQ=255)                                                                        aaCGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCa                                                                               >  6:25333/1‑149 (MQ=255)                                                                        aaCGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCa                                                                               >  7:163775/1‑149 (MQ=255)                                                                           gAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCAccc                                                                            <  4:37444/149‑1 (MQ=255)                                                                                gTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCgg                                                                       >  6:215205/1‑149 (MQ=255)                                                                                    ggTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTgg                                                                   <  6:148480/149‑1 (MQ=255)                                                                                     gtgtCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGt                                                                  <  6:298999/149‑1 (MQ=255)                                                                                       atttcccctccaaacgattgcggcctaggctcatggttaggagcccgctgcatcggtggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTc                                                                 >  8:244164‑M2/63‑148 (MQ=255)                                                                                        tttcccctccaaacgattgcggcctaggctcatggttaggagcccgctgcatcggtggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCg                                                                >  7:156889‑M2/62‑148 (MQ=255)                                                                                          gTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAAc                                                             <  5:25333/149‑1 (MQ=255)                                                                                           cccctccaaacgattgcggcctaggctcatggttaggagcccgctgcatcggtggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACg                                                            >  4:295079‑M2/59‑149 (MQ=255)                                                                                                  ACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACaa                                                                                                                           >  1:339935‑M1/1‑79 (MQ=255)                                                                                                  ACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACaa                                                                                                                           <  2:339935‑M1/79‑1 (MQ=255)                                                                                                      gattgcggcctaggctcatggttaggagcccgctgcatcggtggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCa                                                 <  3:295079‑M2/102‑1 (MQ=255)                                                                                                      aTGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCa                                                 >  6:70954/1‑149 (MQ=255)                                                                                                         cAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCAcc                                               <  8:163775/148‑1 (MQ=255)                                                                                                                   cTAACCATGAGCCTAGGCCGCAATCGTTTAGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCt                                     <  5:351670/148‑1 (MQ=255)                                                                                                                     aaCCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTAcc                                  >  2:252336/1‑149 (MQ=255)                                                                                                                       gcATGAGCCTCGGCCGCACTCGTTTGGCGGGGAAA‑TGCTCGGTAACCCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTg                                <  4:14542/148‑1 (MQ=255)                                                                                                                         aTGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCttc                               >  3:14542/1‑146 (MQ=255)                                                                                                                                     cGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTcgcgg                  >  3:239679/1‑149 (MQ=255)                                                                                                                                      gCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTcgcggc                 >  6:95831/1‑149 (MQ=255)                                                                                                                                         catcggtggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTcgcggcgc               <  8:156889‑M2/136‑1 (MQ=255)                                                                                                                                             tttGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTCgcggcgcggc            >  6:288268/1‑147 (MQ=255)                                                                                                                                                ggaggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTCGCGGCGCGGCCAGt        <  1:252336‑M2/143‑1 (MQ=255)                                                                                                                                                  aggGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCATCGGCTGTTCGAACGCAGCCTCGCCACCCGCGAACGCTACCTGCAACTGAt                        <  1:137292‑M2/127‑1 (MQ=255)                                                                                                                                                     ggAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTCGCGGCGCGGCCAGTGAAGGc  >  1:153789/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGAATTACAAGATTATTCACTGGCTGATAGAAAACAAGCCTTTTTAGTGGCAGTATTTTGTTTAAATATACAACGAGTGGTTGGGTGTCGTGCCTCCACCGATGCAGCGGGCTCCTAACCATGAGCCTAGGCCGCAATCGTTTGGAGGGGAAA‑TGCTCGGTAAACCGCCCTTACAATTAGCCTGGAGTCCAGTACATGCATCCGCGCATCCTTGAGGTCACCCAGCGGCTGGTCGAACGCAGCCGCGCCACCCGCGAACGCTACCTGCAACTGATTCGCGGCGCGGCCAGTGAAGGC  >  NC_002947/1151081‑1151377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.