| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1419549 | 25 (0.460) | 17 (0.320) | 15/254 | NT | 43.4% | intergenic (‑38/+98) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419636 | 20 (0.380) | intergenic (‑125/+11) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
GTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGC > NC_002947/1419495‑1419775 | gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGTTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCAGCGAAGAGGCCTGa > 5:343129/1‑149 (MQ=255) ttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAAGCCCGCGACCACCGGTACTGTGGAGTGCGTGACGGGGGGGGTGCCGCGGTGGGTGCGGGCGTG‑GCCGGGGAGAGCCCTGACCt > 8:314121/1‑149 (MQ=255) ggTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTACCACAGGTACGGTGCAGTGCGTGACGGCTGTGGGGACCCAGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCAGCTaa > 2:101317/1‑149 (MQ=38) cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGGTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGCCCTGCTAATGGAAg > 5:100958/1‑149 (MQ=37) ttgtttCCCTGCATGCGGGGTTGCCTGGGCGGGCCTCTTCCCGGCCACGCCCGCGCCCACCGCTACTGGGCAGTGCGGCACGGCTGTGGTGACCCGGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa < 3:251279/148‑1 (MQ=255) tcttttCCGTGGATTCTGGTTTGCCTGGGCTGGCCTCTTCGCTGGCAGGCCCGCTCCCACTGGTACTGTGCTGTGCTTGAGGGGTGTGGTTACCCTGTGGGAGGGGGCTTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa < 6:318991/145‑1 (MQ=255) gttcCCCTGTATTCTGGGTGGCCGGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACCGGTCCTGTGCAGGGCGGGACGGCTGTGGTGACCCGGTGGGAGCGGGGGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAgg < 6:100958/148‑1 (MQ=25) ttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGCGTGACGGCTGTGGTGACCGTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGGAAGGTGTGa > 5:318991/1‑144 (MQ=37) tCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTAGCCGGCACCCCCCCTCCCAAACGTAAAGTGCACTTCGTGAAGGCTGTGGTTAACCAGTTGGAGCGGGCCTT‑GCCCCCAAAAAGCCAGACCAGCGAATGAAAAGTGTGAAGcgat > 4:80873/1‑146 (MQ=255) gATTCTGGGGTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGGGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTgg < 5:180943/147‑1 (MQ=37) gATGCTGGGTTGCCTGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGGGGTTACCCTGGGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTgg < 1:101317/147‑1 (MQ=37) ttCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTa > 1:235406/1‑148 (MQ=255) tGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTTCTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGGG‑CCCGCGAAGAGGCCTGACCGGCTAATGCAAGGTGTGTGGCTCTGTGGGTAAATg > 5:315798/1‑149 (MQ=37) tGGGGTGCGTGGGCTGGCCTCTTCGCGGGCACGCGCGCTCCCAGTGGTACTGTGCAGTGCGTGACGGCTGTGGTGTCCCTGGGGGAGCGGGCGTGCCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt < 1:85498/149‑1 (MQ=255) cCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACt < 8:103569‑M1/148‑1 (MQ=255) GGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACg < 7:302166‑M1/149‑1 (MQ=255) CACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCt < 1:73262‑M1/81‑1 (MQ=255) aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagt < 2:205819‑M2/149‑74 (MQ=255) ACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTCGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGACTGACCTGCTAATGCAAGGTCTGAGGCTCTGTGGGTAAATGCGCCCGCATCTGCAACTGCATCAACGCCGa < 6:323479‑M1/149‑1 (MQ=255) CCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTc > 8:302166‑M1/1‑149 (MQ=255) ccGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcgg < 2:107695‑M2/148‑77 (MQ=255) GCTCCCACTGGTAGTGTGCCGTGGGTTACGGGTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCTAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc > 2:85747‑M1/1‑149 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgcctgaccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcg > 6:11363‑M2/1‑68 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgcctgaccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcg < 5:11363‑M2/143‑76 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaaga < 5:235627‑M2/149‑82 (MQ=255) TCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc < 7:260114‑M1/147‑1 (MQ=255) ccACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacc < 8:96666‑M2/149‑84 (MQ=255) CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg > 8:321344‑M1/1‑101 (MQ=255) CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg < 7:321344‑M1/101‑1 (MQ=255) CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGc < 3:64762‑M1/149‑1 (MQ=255) CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGAAACTGCATCAACGCCGACTCGACCAGc < 3:16300‑M1/149‑1 (MQ=255) AGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc < 6:58271‑M1/141‑1 (MQ=255) AGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc > 5:58271‑M1/1‑141 (MQ=255) GTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt < 2:24988‑M1/102‑1 (MQ=255) GTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt > 1:24988‑M1/1‑102 (MQ=255) cTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttcta > 7:96666‑M2/1‑57 (MQ=255) tgCTGTGCGTGACGGCTGTGGTGAGCCTGTGGGAGCTGGCGTG‑GCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTAcc < 6:343129/146‑1 (MQ=255) tgCAGTGCGTGAGGGATGTGGCGACCGTGTGGGTGGGGGCGGG‑CCCGGTAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTAcc < 3:80873/146‑1 (MQ=255) tgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaaccccaccacagtcggcaagacctgcttctac > 1:205819‑M2/1‑54 (MQ=255) tggtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACg > 5:145197/1‑149 (MQ=255) gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg < 5:93573/59‑1 (MQ=255) gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg > 6:93573/1‑59 (MQ=255) gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc > 7:320292/1‑149 (MQ=255) cccTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGc < 2:235406/149‑1 (MQ=255) acctGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgc < 6:39382‑M2/71‑43 (MQ=255) acctGTGGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgc > 5:39382‑M2/2‑30 (MQ=255) tgGGAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttcc > 6:235627‑M2/1‑25 (MQ=255) gggAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagaccagcttcttccaaggcgaaaaccacccgaacccgctgttgcg < 2:293777‑M2/148‑125 (MQ=255) gAGCGGGCGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcat < 4:18381‑M2/149‑128 (MQ=255) ggCGTG‑CCAGCGAAGAGgccagcccaggcaacccagattccagggaaacaaaacaatgcccaccgacaacacaacagaacccacaacagtcggcatgacctgcttctaccaaggcgaaaacaacactaacactgagttccgcatctacc < 6:350438‑M2/149‑133 (MQ=255) cGTG‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaaccc > 3:18381‑M2/1‑15 (MQ=255) g‑CCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggc < 2:114298‑M2/149‑138 (MQ=255) ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcat < 3:227806‑M2/149‑140 (MQ=255) | GTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGC > NC_002947/1419495‑1419775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |