New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1617758 =	54 (1.000)	3 (0.070)	3/222	NT	7.7%	intergenic (‑13/+160)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1617897 =	26 (0.560)					intergenic (‑152/+21)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC

TCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCAGCTTGGCG  >  NC_002947/1617758‑1618044                                                                                                                                            |                                                                                                                                                    TCCTGTGGGAGCGGCCTTGCGGCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCTATGCGATCTGTACTAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGa                                                                                                                                            >  5:349769‑M1/1‑149 (MQ=255)        GGAGCGGCCTTGCGTCGCGATCGGGCGCGATGCTGCCGCTAAACCTCCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGAc                                                                                                                                     >  5:324652‑M1/1‑149 (MQ=255)             GGCCTTGCTTCGCGATCGGGCGCTAAGCTGCCGCTAAACCTGCCTATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCt                                                                                                                                >  4:269883‑M1/1‑149 (MQ=255)               CCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTc                                                                                                                                         >  4:214015‑M1/1‑138 (MQ=255)               CCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTc                                                                                                                                         <  3:214015‑M1/138‑1 (MQ=255)                CTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTAAGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAACGCCGCTACCACAGGAGTGGTGGTTAGTACGACAGgctaa                                                                                                                              <  4:206448‑M1/148‑3 (MQ=255)                              gggcgcgaagcggcccctggcacagccgatacgatgcttcgtacagatcgcatcggcaggtttagcggcagcttcgcgcccgatcgcgacgcaaggccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGaa                                                                                                               >  4:69471‑M2/111‑149 (MQ=255)                                gcgcgaagcggcccctggcacagccgatacgatgcttcgtacagatcgcatcggcaggtttagcggcagcttcgcgcccgatcgcgacgcaaggccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAAtt                                                                                                             >  4:84839‑M2/109‑149 (MQ=255)                                  gcgAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTcc                                                                                                           >  2:251953/1‑149 (MQ=255)                                     atgCTGCCGCTAACCCTGCCGATGCTATCTGTACGACGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTg                                                                                                        <  7:175322/147‑1 (MQ=255)                                     aagcggcccctggcacagccgatacgatgcttcgtacagatcgcatcggcaggtttagcggcagcttcgcgcccgatcgcgacgcaaggccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTg                                                                                                        <  3:69471‑M2/46‑1 (MQ=255)                                     aaGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTg                                                                                                        >  7:76872/1‑149 (MQ=255)                                        cTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGc                                                                                                      >  6:184972/1‑148 (MQ=255)                                              cTAAACCTGCCGATGCGATCTGTACGATGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGcc                                                                                               <  5:325561/149‑1 (MQ=255)                                              cTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGcc                                                                                               <  3:206448/149‑1 (MQ=255)                                                   ccTGCCGCTGCGATCTGACCGAAGCATCGTATGGGCTGGGCCTGGGCCCGCTGCGCGCCCGATCCCGACACACGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTa                                                                                          <  3:293433/149‑1 (MQ=255)                                                      gCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGAt                                                                                                                        >  7:300885/1‑116 (MQ=255)                                                      gCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGAt                                                                                                                        <  8:300885/116‑1 (MQ=255)                                                      gCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGt                                                                                        >  5:337363/1‑148 (MQ=255)                                                       ccGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCa                                                                                      <  5:184972/149‑1 (MQ=255)                                                         gATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGc                                                                                    >  8:232040/1‑149 (MQ=255)                                                          aTGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGc                                                                                    >  3:170590/1‑148 (MQ=255)                                                              gATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCt                                                                                                          <  7:322153/122‑1 (MQ=255)                                                              gATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCt                                                                                                          >  8:322153/1‑122 (MQ=255)                                                                    tACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGcttc                                                                          <  1:251953/148‑1 (MQ=255)                                                                                    ggCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAg                                                         <  8:76872/149‑1 (MQ=255)                                                                                          gCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTc                                                   >  6:37347/1‑149 (MQ=255)                                                                                             aGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGcc                                                >  7:128685/1‑149 (MQ=255)                                                                                                ggCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGt                                             >  4:93903/1‑149 (MQ=255)                                                                                                     cTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATgg                                        >  1:64728/1‑149 (MQ=255)                                                                                                       tCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAg                                                                 <  6:203519/122‑1 (MQ=255)                                                                                                       tCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAg                                                                 >  5:203519/1‑122 (MQ=255)                                                                                                         gcgcCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGaa                                    <  3:93903/149‑1 (MQ=255)                                                                                                            cccGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACgg                                 <  6:337363/149‑1 (MQ=255)                                                                                                            cccGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACgg                                 <  4:170590/149‑1 (MQ=255)                                                                                                                        acaAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTcgcg                     >  4:293766/1‑149 (MQ=255)                                                                                                                        acaAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGACAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCAAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTagcg                     >  8:29359/1‑149 (MQ=255)                                                                                                                             gccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACg                                  <  7:273017‑M2/116‑1 (MQ=255)                                                                                                                             gccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACg                                  >  8:273017‑M2/16‑131 (MQ=255)                                                                                                                             gccgctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAAATCCTTGGCCAGCGCCTTGTAGTCCGCCACTTGCTTATTAACATAGACGTCCAGCTCTTCGCCGGTCATGGCGAACGCGAACAGCTCGCGCGGGt                >  4:251740‑M2/16‑149 (MQ=255)                                                                                                                                gctcccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGtctc             >  4:159450‑M2/13‑149 (MQ=255)                                                                                                                                    ccacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCa          <  3:159450‑M2/140‑1 (MQ=255)                                                                                                                                     cacaggaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCAGc        <  3:84839‑M2/142‑1 (MQ=255)                                                                                                                                          gaGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCAGCTTGGc   >  1:170163‑M2/3‑149 (MQ=255)                                                                                                                                            gtggtggtgAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCATATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCAGCTTGGCg  >  5:201449/1‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                    TCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGATCCCGACACAAGGCCGCTCCCACAGGAGTGGTGGTGAGTCCGACAGGCTTACTGGATCAGGCCGAATTCCTTGGCCAGCGCCTTGTAGTCAGCCACTTGCTTCTTCACATAGCCGTCCAGCTCTTCGCCGGTCATGGCGAACGGGAACAGCTCGCGCTGGTCTCGCAGCTTGGCG  >  NC_002947/1617758‑1618044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.