New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2297165	43 (0.800)	8 (0.160)	7/246	NT	17.3%	coding (2957/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	= 2297200	36 (0.700)					coding (2922/3645 nt)	sbcC	exonuclease subunit SbcC

GTGCACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGC  >  NC_002947/2297055‑2297347                                                                                                                                                  |                                                                                                                                                    gtgCACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacg                                                                                                                                                  <  7:92401‑M2/149‑4 (MQ=255)   gCACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcg                                                                                                                                                <  8:87496‑M2/149‑6 (MQ=255)   gCACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcg                                                                                                                                                <  6:180004‑M2/149‑6 (MQ=255)    cACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcgg                                                                                                                                               <  1:55455‑M2/149‑7 (MQ=255)      cGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGcc                                                                                                                                             <  5:229933/149‑1 (MQ=255)        gacgatgccggcctcgatcgcctgctggccatggatgacgcgcaagtcaatgaattgcgccagcgtttgcaaggcgcggaaaaagccatcgagcaggGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGccc                                                                                                                                            <  4:262876‑M1/51‑1 (MQ=255)        gacgatgccggcctcgatcgcctgctggccatggatgacgcgcaagtcaatgaattgcgccagcgtttgcaaggcgcggaaaaagccatcgagcaggGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGccc                                                                                                                                            >  3:262876‑M1/98‑148 (MQ=255)             cGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTc                                                                                                                                       <  4:253070/148‑1 (MQ=255)               gcgcATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGAt                                                                                                                                    <  2:55455/149‑1 (MQ=255)               gcgcATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGAt                                                                                                                                    >  5:220089/1‑149 (MQ=255)                cggcctcgagcgcctgctggccatggatgacgcgcaagtcaatgaattgcgccagcgtttgcaaggcgcggaaaaagccatcgagcaggGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATg                                                                                                                                   >  8:77266‑M1/90‑149 (MQ=255)                             gTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGa                                                                                                                                     <  6:225027/134‑1 (MQ=255)                             gTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGa                                                                                                                                     >  5:225027/1‑134 (MQ=255)                                            ttCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGgc                                                                                                       <  5:80453/149‑1 (MQ=255)                                            ttCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCAACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGgc                                                                                                       >  3:317605/1‑149 (MQ=255)                                               gcgcAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCt                                                                                                                                           <  7:316775/110‑1 (MQ=255)                                               gcgcAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCt                                                                                                                                           >  8:316775/1‑110 (MQ=255)                                               gcgcAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCC‑GCAGCAGGGCGCCGCCCTGGGGGATTGCTTTTTACCCGGCTTGCAAACGCTTGCCCaa                                                                                                   >  7:31027/1‑149 (MQ=255)                                                 gcAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAAt                                                                                                  <  8:92401/149‑1 (MQ=255)                                                     ttCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCAt                                                                                              >  3:125098/1‑149 (MQ=255)                                                       cGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCAtt                                                                                             <  5:180004/148‑1 (MQ=255)                                                          ccAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCTGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTg                                                                                            <  3:68490/146‑1 (MQ=255)                                                          ccAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTg                                                                                            >  4:68490/1‑146 (MQ=255)                                                          ccAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACt                                                                                         >  7:40738/1‑149 (MQ=255)                                                           cAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACtt                                                                                        <  8:40738/149‑1 (MQ=255)                                                                    cTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCAt                                                                               >  6:348843/1‑149 (MQ=255)                                                                       cAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCa                                                                            >  6:332219/1‑149 (MQ=255)                                                                          acagatgACCGTGGACACCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATgg                                                                         >  8:266850/7‑149 (MQ=255)                                                                            cTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGc                                                                        >  1:21288/1‑148 (MQ=255)                                                                             ttGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGc                                                                        >  8:212594/1‑147 (MQ=255)                                                                             ttGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCca                                                                      <  2:300230/149‑1 (MQ=255)                                                                                gACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCcag                                                                     >  7:251900/1‑147 (MQ=255)                                                                                   cGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGTTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGc                                                                >  1:335900/1‑149 (MQ=255)                                                                                   cGTGGTGTCAACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTACTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGc                                                                >  2:309407/1‑149 (MQ=255)                                                                                               ggTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGAt                                                                                                                                    >  5:112219/1‑69 (MQ=255)                                                                                               ggTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGAt                                                                                                                                    <  6:112219/69‑1 (MQ=255)                                                                                                   aTCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcggcgcagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaat                                                        >  4:256276‑M2/1‑48 (MQ=255)                                                                                                   aTCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcggcgcagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaat                                                        <  3:256276‑M2/141‑94 (MQ=255)                                                                                                   aTCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcggcacagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgc                                                                              >  7:219145‑M2/1‑48 (MQ=255)                                                                                                   aTCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcggcacagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgc                                                                              <  8:219145‑M2/119‑72 (MQ=255)                                                                                                    tCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGacgcggcccagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaatgcgccgaat                                               <  1:33263‑M2/149‑103 (MQ=255)                                                                                                        tgCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGTTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCa                                           <  2:335900/149‑1 (MQ=255)                                                                                                        tgCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCa                                           <  7:266850/149‑1 (MQ=255)                                                                                                        tgCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCa                                           <  3:204402/149‑1 (MQ=255)                                                                                                         GCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAg                                          <  4:72828‑M1/149‑1 (MQ=255)                                                                                                                      gcAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCg                             >  4:280787/1‑149 (MQ=255)                                                                                                                          gcgcTGTTCGCGCTCCTGCAGCATCacgcggcacagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaatgcgccgaattgcgtgcacaacaggc                               >  3:98079‑M2/1‑25 (MQ=255)                                                                                                                          gcgcTGTTCGCGCTCCTGCAGCATCacgcggcacagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaatgcgccgaattgcgtgcacaacaggc                               <  4:98079‑M2/143‑119 (MQ=255)                                                                                                                            gcTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTgcgc                       <  3:280787/149‑1 (MQ=255)                                                                                                                                ttCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACt                   >  7:280484/1‑149 (MQ=255)                                                                                                                                           gcagcaGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTgg        >  3:314288/1‑149 (MQ=255)                                                                                                                                            cagcagGacgcggcccagatgaccgtggacaccacggtccaagccctggagcaagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaatgcgccgaattgcgtgcacaacaggccgacgaccagcgccgccagcaggc       >  2:33263‑M2/1‑7 (MQ=255)                                                                                                                                            cagcagGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTggg       >  6:61083/1‑149 (MQ=255)                                                                                                                                             agcagGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGc      <  8:280484/149‑1 (MQ=255)                                                                                                                                             agcagGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGc      >  5:56968/1‑149 (MQ=255)                                                                                                                                                agGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTg   >  8:3422/1‑149 (MQ=255)                                                                                                                                                 ggACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGc  <  3:72828/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTGCACGCAATTCGGCGCATTGCTGCTCGTGGTTTGCCAGGCGTTCGCGCAGTTCGGCCAAGGCTTGCTCCAGGGCTTGGACCGTGGTGTCCACGGTCATCTGTGCCGCGTGATGCTGCAGGCGCTGTTCGCGCTCCTGCAGCAGGACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGC  >  NC_002947/2297055‑2297347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.