New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2338988 =	45 (0.830)	4 (0.080)	4/248	NT	8.6%	coding (781/1080 nt)	PP_2055	isomerase
	?	NC_002947	2339036 =	42 (0.810)					coding (829/1080 nt)	PP_2055	isomerase

GGAAGCGTTGCGGCTGAAGGCCGGAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGACGCGCAG  >  NC_002947/2338888‑2339184                                                                                                                                                     |                                                                                                                                                     cctgggccagttgctgcgcgccttcgcccaacaggtcggcaatcacggtgccagggctgacgcaggcagtcgccagccccaccgctccagtgatcgccaaGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCt                                                                                                                                                      >  6:170262‑M1/101‑149 (MQ=255)    aGCGTTGCGGCTGAAGGCCGGAAAGGCCATTGGGCTTGGCGATGTGAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTgg                                                                                                                                                   <  6:244342/149‑1 (MQ=255)     ggccagttgctgcgcgccttcgcccaacaggtcggcaatcacggtgccagggctgacgcaggcagtcgccagccccaccgctccagtgatcgccaaGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGc                                                                                                                                                  >  3:143319‑M1/97‑149 (MQ=255)            ggCTGAAGGCCGGAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACt                                                                                                                                           >  6:233465/1‑149 (MQ=255)               tGAAGGCCGGAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTg                                                                                                                                          >  7:179376/1‑147 (MQ=255)                   ggCCGGAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCgg                                                                                                                                    >  6:150566/1‑149 (MQ=255)                        gAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTgggg                                                                                                                               <  5:150566/149‑1 (MQ=255)                                     ccTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCgg                                                                                                                                    <  5:271071/131‑1 (MQ=255)                                     ccTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTAATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCgg                                                                                                                                    >  6:271071/1‑131 (MQ=255)                                         ggCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGActgcctgc                                                                                                                <  4:289944/147‑1 (MQ=255)                                         ggCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGt                                                                                                              <  8:179376/149‑1 (MQ=255)                                              tGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGcc                                                                                                         <  4:258921/149‑1 (MQ=255)                                                 cAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTg                                                                                                      >  8:154158/1‑149 (MQ=255)                                                     ggCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCAc                                                                                                  >  3:123277/1‑149 (MQ=255)                                                      gCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCAcc                                                                                                 >  8:205901/1‑149 (MQ=255)                                                              aTCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTg                                                                                          <  6:16340/148‑1 (MQ=255)                                                              aTCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGc                                                                                         >  4:200335/1‑149 (MQ=255)                                                               tCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGcc                                                                                        <  4:266987/149‑1 (MQ=255)                                                                ccccAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTg                                                                                          <  8:311050/146‑1 (MQ=255)                                                                ccccAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTg                                                                                          >  7:311050/1‑146 (MQ=255)                                                                  ccAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGAc                                                                                     <  4:123277/149‑1 (MQ=255)                                                                      gCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGt                                                                                 <  5:233465/149‑1 (MQ=255)                                                                        cAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGtt                                                                                <  4:313/148‑1 (MQ=255)                                                                                   tCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTggg                                                                             <  4:88524/140‑1 (MQ=255)                                                                                   tCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTggg                                                                             >  3:88524/1‑140 (MQ=255)                                                                                   tCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGgcgc                                                                    >  5:266072/1‑149 (MQ=255)                                                                                     cAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTgggg                                                                                                                               <  4:193630/88‑1 (MQ=255)                                                                                     cAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGgcgcg                                                                   >  3:126868/1‑148 (MQ=255)                                                                                      aaGCCGCGCTACGACGGCACGCTGCAGGATCGCTATTTCATGCCGCACAACTCCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCgca                                                                 >  5:276221/1‑149 (MQ=255)                                                                                       aGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCgcag                                                                >  5:34852/1‑149 (MQ=255)                                                                                              cTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTgg                                                         <  7:154158/149‑1 (MQ=255)                                                                                                gccaaggcacgatggcagttgtgcggcatgaaatagcgaacctgcagcgtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGcc                                                       >  3:143319‑M2/54‑149 (MQ=255)                                                                                                    aggcacgatggcagttgtgcggcatgaaatagcgaacctgcagcgtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAgg                                                   >  6:170262‑M2/50‑149 (MQ=255)                                                                                                           cTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCt                                            >  5:216/1‑149 (MQ=255)                                                                                                              gcagttgtgcggcatgaaatagcgaacctgcagcgtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGa                                         <  4:143319‑M2/110‑1 (MQ=255)                                                                                                              cAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTg                                           <  6:266072/147‑1 (MQ=255)                                                                                                                      cTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCAccc                                   >  5:227710/1‑147 (MQ=255)                                                                                                                      cTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCaa                                 <  8:3585/149‑1 (MQ=255)                                                                                                                           tCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTggc                            >  7:75110/1‑149 (MQ=255)                                                                                                                           tCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTgg                             <  6:16279/148‑1 (MQ=255)                                                                                                                            tgaaatagcgaacctgcagcgtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTggcg                           <  5:170262‑M2/124‑1 (MQ=255)                                                                                                                             aTGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTggcg                           <  6:227710/148‑1 (MQ=255)                                                                                                                               gCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCa                        >  3:154926/1‑149 (MQ=255)                                                                                                                                ccGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCAt                       >  7:245705/1‑149 (MQ=255)                                                                                                                                 cGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATc                      <  3:200335/149‑1 (MQ=255)                                                                                                                                    acaACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGAt                   <  4:126868/149‑1 (MQ=255)                                                                                                                                     caACTGCCTTCGTGGCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGGCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATg                  <  6:276221/149‑1 (MQ=255)                                                                                                                                      aaCTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGt                 >  8:252051/1‑149 (MQ=255)                                                                                                                                        cTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTg               >  5:53201/1‑149 (MQ=255)                                                                                                                                           ccATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTgcgc            <  6:53201/149‑1 (MQ=255)                                                                                                                                                gtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGtt                <  6:168709‑M2/135‑1 (MQ=255)                                                                                                                                                gtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGtt                >  5:168709‑M2/6‑140 (MQ=255)                                                                                                                                                gtgccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGAcg       >  7:235437‑M2/6‑149 (MQ=255)                                                                                                                                                   ccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGAcgcg     >  6:315952‑M2/3‑148 (MQ=255)                                                                                                                                                   ccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGAcgcg     >  8:200470‑M2/3‑148 (MQ=255)                                                                                                                                                   ccTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGACgcgc    <  6:226695‑M2/147‑1 (MQ=255)                                                                                                                                                     ttGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGACGCGCAg  >  2:227795/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGAAGCGTTGCGGCTGAAGGCCGGAAAGGCCATGGGCCTGGGCGATGTCAGTGGCATGGTCATCCCCAAGCCAGTGCTGGTGTCCAAGCCGCGCTACGACGGCACGCTGCAGGTTCGCTATTTCATGCCGCACAACTGCCATCGTGCCTTGGCGATCACTGGAGCGGTGGGGCTGGCGACTGCCTGCGTCAGCCCTGGCACCGTGATTGCCGACCTGTTGGGCGAAGGCGCGCAGCAACTGGCCCAGGTCCGCCTGGAGCACCCAAGTGGCGGCATCGATGTTGCGCTGACGCGCAG  >  NC_002947/2338888‑2339184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.