New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2404685 =	29 (0.540)	5 (0.100)	5/246	NT	13.1%	coding (30/240 nt)	PP_2107	hypothetical protein
	?	NC_002947	2404717 =	39 (0.760)					coding (62/240 nt)	PP_2107	hypothetical protein

CAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTGGCCG  >  NC_002947/2404574‑2404856                                                                                                                                                |                                                                                                                                            cagGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTgtgt                                                                                                                                        >  1:306900/1‑149 (MQ=255)     ccgcagcaccggaatgatcaggccataacgctcgaacaaaggctcgctctcggcgatgtcgaccagctctaccagcaggccatgatcgaccagaggcatcaacacagCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGAt                                                                                                                                    >  4:76867‑M1/108‑149 (MQ=255)     aTTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGAt                                                                                                                                    >  6:311613/1‑149 (MQ=255)     aTTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGAt                                                                                                                                    <  2:93598/149‑1 (MQ=255)        gAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGc                                                                                                                                  <  2:2473/148‑1 (MQ=255)          gCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCctc                                                                                                                               >  4:181100/1‑149 (MQ=255)                  aggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGa                                                                                                                        <  5:311613/148‑1 (MQ=255)                               gCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTgg                                                                                                          >  4:145740/1‑149 (MQ=255)                                acgctcgaacaaaggctcgctctcggcgatgtcgaccagctctaccagcaggccatgatcgaccagaggcatcaacacagCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTgg                                                                                                                            <  4:320882‑M1/50‑1 (MQ=255)                                acgctcgaacaaaggctcgctctcggcgatgtcgaccagctctaccagcaggccatgatcgaccagaggcatcaacacagCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTgg                                                                                                                            >  3:320882‑M1/81‑130 (MQ=255)                                           tataaTAGGCTTCTGTGTATGCCAACGCGGTACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCct                                                                                                               <  6:182093/129‑1 (MQ=255)                                           tAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTTCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGACACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGCCct                                                                                                               >  5:182093/1‑132 (MQ=255)                                            aGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGa                                                                                             >  8:298268/1‑149 (MQ=255)                                                     ttCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGAt                                                                                                                                    >  4:300910/1‑101 (MQ=255)                                                     ttCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGcc                                                                                      >  1:190927/1‑147 (MQ=255)                                                       cTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCga                                                                                    <  6:147800/147‑1 (MQ=255)                                                                    cccGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGtt                                                                     <  2:41011/149‑1 (MQ=255)                                                                                     gctgcCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGa                                                    >  8:113951/1‑149 (MQ=255)                                                                                     gctgcCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGa                                                    >  5:172266/1‑149 (MQ=255)                                                                                        gcCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCa                                                 >  5:248931/1‑149 (MQ=255)                                                                                           tGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTc                                              >  2:93326/1‑149 (MQ=255)                                                                                             aaTGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTcc                                             <  7:298268/148‑1 (MQ=255)                                                                                              ccagaggcatcaacacagcctcggccacttcgcagaggtggcagccgaggCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGt                                                              >  3:320882‑M2/51‑130 (MQ=255)                                                                                              ccagaggcatcaacacagcctcggccacttcgcagaggtggcagccgaggCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGt                                                              <  4:320882‑M2/80‑1 (MQ=255)                                                                                                gTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGTCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGtg                                         >  7:214903/1‑149 (MQ=255)                                                                                                gTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTgg                                                                                                                            >  6:222410/1‑66 (MQ=255)                                                                                                   aaCTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAgagggagc                                                                            <  8:32320/111‑1 (MQ=255)                                                                                                   aaCTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAgagcgagc                                                                            >  7:32320/1‑111 (MQ=255)                                                                                                   aaCTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGtgctg                                      >  7:242054/1‑149 (MQ=255)                                                                                                      atcaacacagcctcggccacttcgcagaggtggcagccgaggCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTgcgg                                   >  4:76867‑M2/43‑149 (MQ=255)                                                                                                        ttCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTgcggcg                                 >  4:129322/1‑149 (MQ=255)                                                                                                          cGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCt                               >  5:293006/1‑149 (MQ=255)                                                                                                           ggCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGGTATGGCCTGATCATTCCGGTGCTGCGGCGCtg                              >  1:255416/1‑149 (MQ=255)                                                                                                            gCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCtgt                             >  3:79236/1‑149 (MQ=255)                                                                                                             cACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCtgtg                            <  6:248931/149‑1 (MQ=255)                                                                                                             cACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCtgtg                            <  6:172266/149‑1 (MQ=255)                                                                                                                 CTCGGCTGCCACCTCTGCGTAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACaa                        >  1:96099‑M1/1‑149 (MQ=255)                                                                                                                    ctcggccacttcgcagaggtggccgaggCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACgg                     >  3:311393‑M2/29‑149 (MQ=255)                                                                                                                       tGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAAc                       >  4:318775/1‑144 (MQ=255)                                                                                                                       tGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAAc                       <  3:318775/144‑1 (MQ=255)                                                                                                                        gccacttcgcagaggtggccgaggCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTAAGTGCTGCTAATTACCGTGCTGCGGCGCTGTGACAACGGCGcc                 >  1:287444‑M2/25‑149 (MQ=255)                                                                                                                         ccACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGcc                 <  2:306900/148‑1 (MQ=255)                                                                                                                           aCCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAg              <  3:181100/149‑1 (MQ=255)                                                                                                                             ctctGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGtt            <  3:129322/149‑1 (MQ=255)                                                                                                                             ctctGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGtt            <  7:113951/149‑1 (MQ=255)                                                                                                                              tctGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGtt                                                                     >  4:300852/1‑91 (MQ=255)                                                                                                                              tctGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTg           >  7:232789/1‑149 (MQ=255)                                                                                                                                   gAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTg      <  3:145740/149‑1 (MQ=255)                                                                                                                                    aaGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTgg     <  8:242054/149‑1 (MQ=255)                                                                                                                                     aGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTGGc    <  2:190927/149‑1 (MQ=255)                                                                                                                                      gTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTGGcc   >  4:298241/1‑149 (MQ=255)                                                                                                                                       tGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTGGCCg  >  8:188796/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                            CAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGCGTTATGGCCTGATCATTCCGGTGCTGCGGCGCTGTGACAACGGCGCCGAGTTGCACTGGCCG  >  NC_002947/2404574‑2404856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.