New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2591383 =	62 (1.150)	4 (0.080)	4/250	NT	6.4%	coding (299/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase
	?	NC_002947	2591422 =	58 (1.120)					coding (338/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase

TGGATCAAATCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCGCCA  >  NC_002947/2591275‑2591570                                                                                                                                                    |                                                                                                                                                      agttggccgctacccacggtttaacgtcgaagctcgggcaagccttggctactttcgggaagtcccggtggccttggattgtcgcgctggggtatttctctttcagctCGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAg                                                                                                                                                      >  3:148843‑M1/109‑149 (MQ=255)   gATCAAATCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGc                                                                                                                                                     <  3:26445/148‑1 (MQ=255)   gATCAAATCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCt                                                                                                                                                    <  4:93680/149‑1 (MQ=255)   gATCAAATCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCt                                                                                                                                                    >  2:266897/1‑149 (MQ=255)        aaTCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGa                                                                                                                                                  >  8:292267/1‑146 (MQ=255)        aaTCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAag                                                                                                                                               <  3:244352/149‑1 (MQ=255)        aaTCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAag                                                                                                                                               <  7:292267/149‑1 (MQ=255)        aaTCGGCGCCCACGTAGAGGGCAATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACACCCGAGCAGTTAGCAAGTCTCAAGCACCTGCTGGGCGAGCTGa                                                                                                                                                  >  8:60347/1‑146 (MQ=255)          tCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAagag                                                                                                                                             <  2:324853/149‑1 (MQ=255)                    cGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCa                                                                                                                                   <  1:123290/149‑1 (MQ=255)                    cGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCa                                                                                                                                   <  5:819/149‑1 (MQ=255)                      tAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAgc                                                                                                                                 <  3:90311/149‑1 (MQ=255)                             ccATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACaa                                                                                                                          >  6:98077/1‑149 (MQ=255)                               aTAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATc                                                                                                                        >  2:84815/1‑149 (MQ=255)                                  aCATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCaa                                                                                                                     <  5:98077/149‑1 (MQ=255)                                    aTCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAgg                                                                                                                   >  8:246595/1‑149 (MQ=255)                                       aaCTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑a                                                                                                               >  4:240039/1‑149 (MQ=255)                                            cGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCgg                                                                                                           >  5:61453/1‑148 (MQ=255)                                             gTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGa                                                                                                         >  4:216147/1‑149 (MQ=255)                                              tAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGAc                                                                                                        <  4:31191/149‑1 (MQ=255)                                                  cATTTGCATGGCCGGTTGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGGGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTcc                                                                                                    <  1:32262/149‑1 (MQ=255)                                                       gCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGaa                                                                                                <  5:191457/148‑1 (MQ=255)                                                       gCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGaa                                                                                                <  5:186657/148‑1 (MQ=255)                                                       gCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGa                                                                                                 >  8:93294/1‑147 (MQ=255)                                                        cATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGaaa                                                                                               <  7:60347/148‑1 (MQ=255)                                                        cATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGaaa                                                                                               <  1:266897/148‑1 (MQ=255)                                                          tGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTa                                                                                            <  7:109250/149‑1 (MQ=255)                                                                gTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAg                                                                                      >  4:219937/1‑149 (MQ=255)                                                                gTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAg                                                                                      <  3:216147/149‑1 (MQ=255)                                                                  ggAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                    <  1:84815/149‑1 (MQ=255)                                                                      tCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGc                                                                                <  8:210778/149‑1 (MQ=255)                                                                      tCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGc                                                                                <  6:178385/149‑1 (MQ=255)                                                                          cGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGa                                                                            <  7:246595/149‑1 (MQ=255)                                                                          cGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGa                                                                            <  6:61453/149‑1 (MQ=255)                                                                           gAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAg                                                                           >  7:59251/1‑149 (MQ=255)                                                                              gCGTACATCAACGTCCCCTAACACAACTACACGACCGCGCCCTTTGCAATTCTCAAGCACCTTCTGGGAGAGCTGAAAGAGAAATACCCAAGCCCGACAATCCAAGGCA‑ACCGGGACTTCCCGAAAGTAGCCAAGTCTTGCCAGATCt                                                                         <  6:326307/148‑1 (MQ=255)                                                                               cGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTc                                                                       <  7:20078/149‑1 (MQ=255)                                                                                   cATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACg                                                                   >  2:229747/1‑149 (MQ=255)                                                                                        aCGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTaaa                                                              <  3:219937/149‑1 (MQ=255)                                                                                        aCGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTaaa                                                              >  1:345231/1‑149 (MQ=255)                                                                                             cccGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGt                                                          <  7:93294/148‑1 (MQ=255)                                                                                             cccGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTg                                                         <  3:240039/149‑1 (MQ=255)                                                                                               cGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTggg                                                       >  5:209032/1‑149 (MQ=255)                                                                                                   aacaacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                    <  5:155204/116‑1 (MQ=255)                                                                                                   aacaacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                    >  6:155204/1‑116 (MQ=255)                                                                                                   aacaacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCg                                                                             >  8:91213/1‑123 (MQ=255)                                                                                                   aacaacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCg                                                                             <  7:91213/123‑1 (MQ=255)                                                                                                      aacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGc                                                >  6:49613/1‑149 (MQ=255)                                                                                                      aacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGc                                                >  4:259263/1‑149 (MQ=255)                                                                                                        cTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGcc                                               >  6:184484/1‑148 (MQ=255)                                                                                                          tCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                            >  7:293632/1‑149 (MQ=255)                                                                                                           ctcgcccagcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACt                                           >  3:148843‑M2/42‑149 (MQ=255)                                                                                                              GCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                            >  6:307699‑M1/1‑145 (MQ=255)                                                                                                              GCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                            <  5:307699‑M1/145‑1 (MQ=255)                                                                                                              GCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTtat                                        >  8:293632‑M1/1‑149 (MQ=255)                                                                                                                CCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATaa                                      >  2:345231‑M1/1‑149 (MQ=255)                                                                                                                  agcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAg                                                                                           >  5:69747‑M2/35‑94 (MQ=255)                                                                                                                  agcaggggcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAg                                                                                           <  6:69747‑M2/60‑1 (MQ=255)                                                                                                                          tGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTgg                             <  3:259263/148‑1 (MQ=255)                                                                                                                          tGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTgg                             <  5:184484/148‑1 (MQ=255)                                                                                                                             aaGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTAATAAGAGTCGTGGGccc                         >  6:293296/1‑149 (MQ=255)                                                                                                                                  tcAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGt                                                      >  1:167119/1‑115 (MQ=255)                                                                                                                                  tcAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGt                                                      <  2:167119/115‑1 (MQ=255)                                                                                                                                  tcAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGt                    >  4:278205/1‑149 (MQ=255)                                                                                                                                  tcAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGt                    >  4:151109/1‑149 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTACACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGt                    <  5:49613/147‑1 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTg                  >  3:71284/1‑149 (MQ=255)                                                                                                                                     aGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                            >  7:189071/1‑122 (MQ=255)                                                                                                                                     aGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                            <  8:189071/122‑1 (MQ=255)                                                                                                                                        actgctcgggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGata              <  4:148843‑M2/137‑1 (MQ=255)                                                                                                                                            gctgGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCGACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATgg           >  1:76270/1‑149 (MQ=255)                                                                                                                                             ctgGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATgg           <  8:59251/147‑1 (MQ=255)                                                                                                                                                    aGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCGCCa  <  1:229747/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TGGATCAAATCGGCGCCCACGTAGAGGGCCATAACATCAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCC‑ACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCGCCA  >  NC_002947/2591275‑2591570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.