New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2729599 =	34 (0.630)	4 (0.080)	4/244	NT	11.0%	coding (46/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	2729650 =	33 (0.650)					coding (97/1044 nt)	PP_2392	MFS transporter

AATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGA  >  NC_002947/2729503‑2729791                                                                                                                                                    |                                                                                                                                              caccaggggcagcgtgttggagtgcgtcaaggccgtcagcccgttgaacagcacgatgccgatgatcgctagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGCCCGCCATCCCGTTGGTGACGTTGACCCAAGGCTg                                                                                                                                              >  4:38356‑M1/97‑149 (MQ=255) aaTGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTg                                                                                                                                              >  3:126685/1‑149 (MQ=255)                          gTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTg                                                                                                                     >  2:25944/1‑149 (MQ=255)                           tCTGCTCGACCAGATAGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTgg                                                                                                                    >  5:226351/1‑149 (MQ=255)                                tCGACCAGATCGCCGATGGCTTGCACATCAGCCAGGCCATGGGTGGGCAATGGGTCACGGCGTATCCCTTGGGCTCGTTTCTGACCGCCATCCCGTTGGTGACGTTGCCCCAAGGCTGGTATCGGCGCCGGGCGGTGTTGCTGGCGat                                                                                                                >  1:342276/1‑148 (MQ=255)                                           gCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGt                                                                                                    <  6:36555/149‑1 (MQ=255)                                           gCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGt                                                                                                    >  5:36555/1‑149 (MQ=255)                                             cGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGc                                                                                                  <  2:179077/149‑1 (MQ=255)                                                gggCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGt                                                                                               <  6:226351/148‑1 (MQ=255)                                                      gCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACg                                                                                         >  4:124167/1‑149 (MQ=255)                                                       cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGGTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACg                                                                                         <  1:25944/148‑1 (MQ=255)                                                           ccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCt                                                                                                                                               >  4:287856‑M1/39‑90 (MQ=255)                                                           ccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCt                                                                                                                                               <  3:287856‑M1/52‑1 (MQ=255)                                                                cAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGc                                                                               <  4:126685/149‑1 (MQ=255)                                                                   gCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCtt                                                                            >  1:264533/1‑149 (MQ=255)                                                                     cATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGACTTGt                                                                          >  5:14520/1‑149 (MQ=255)                                                                      aTGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTc                                                                         >  8:110063/1‑149 (MQ=255)                                                                           tcagCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTCACCGCCATCCCGATGGTGACGATGACCCAAGGCTGGTATCGGCGCCGGGCGCTCTTGCTGGAGATCAAAGCCTTACTGCAGATCAACGGGCTGACGGCCTTGTCCAAca                                                                    >  8:93874/4‑148 (MQ=255)                                                                              gCAATGGGTCACGGAGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  >  7:293172/1‑148 (MQ=255)                                                                               cAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCaa                                                                >  5:259663/1‑149 (MQ=255)                                                                                aaTGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCaa                                                                >  1:159379/1‑148 (MQ=255)                                                                                   gggTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACg                                                            >  4:223995/1‑149 (MQ=255)                                                                                    ggTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGc                                                           <  6:259663/149‑1 (MQ=255)                                                                                     gTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAGCTCCAACACGCt                                                          >  8:50506/1‑149 (MQ=255)                                                                                               cagccttgggtcaacgtcaccaacgggatggcgggcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTAGCGATCATCGGCATCGTGCTGTTCAACGGGCTGACGGCCTTGACGCACTCCAACACGCTGCCCCTGGtg                                                >  4:38356‑M2/54‑149 (MQ=255)                                                                                                agccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCgg                                                                                                          <  3:287856‑M2/38‑1 (MQ=255)                                                                                                agccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCgg                                                                                                          >  4:287856‑M2/53‑90 (MQ=255)                                                                                                 gccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGtgct                                              >  1:260536‑M2/52‑149 (MQ=255)                                                                                                 GCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGtgct                                              <  4:217901‑M1/149‑1 (MQ=255)                                                                                                          tCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTACAACACGCTGACCCTGGTGCTGCGCttttt                                     >  4:88660/1‑149 (MQ=255)                                                                                                            gTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGaa                                                                      <  3:199041/114‑1 (MQ=255)                                                                                                            gTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGaa                                                                      >  4:199041/1‑114 (MQ=255)                                                                                                                cTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACgg                                <  3:217901/148‑1 (MQ=255)                                                                                                                 tGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  >  3:265963/1‑113 (MQ=255)                                                                                                                 tGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  <  4:265963/113‑1 (MQ=255)                                                                                                                 tGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACgggg                              >  3:238362/1‑149 (MQ=255)                                                                                                                 tGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCAGGCGATCATCGGCTTCGTGCTGTTAAACGGGCTGCCGGCCATGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACgggg                              >  7:301852/1‑149 (MQ=255)                                                                                                                   aCCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGTCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCCGCGCTTTTTCACgggg                              <  7:93874/147‑1 (MQ=255)                                                                                                                   aCCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGc                            <  8:293172/149‑1 (MQ=255)                                                                                                                        cATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGcgg                       <  3:124167/149‑1 (MQ=255)                                                                                                                                 ggTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTg               <  6:14520/148‑1 (MQ=255)                                                                                                                                 ggTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTg               <  2:159379/148‑1 (MQ=255)                                                                                                                                       gTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATggg        <  7:110063/149‑1 (MQ=255)                                                                                                                                           aCCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCt    >  4:170989/1‑149 (MQ=255)                                                                                                                                            cccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCt    >  5:239644‑M2/9‑148 (MQ=255)                                                                                                                                             ccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCAt           >  4:237219‑M2/8‑140 (MQ=255)                                                                                                                                             ccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCAt           <  3:237219‑M2/133‑1 (MQ=255)                                                                                                                                             ccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGa  >  3:282764‑M2/8‑149 (MQ=255)                                                                                                                                                  gcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGc      <  3:152240‑M2/138‑1 (MQ=255)                                                                                                                                                  gcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGc      >  4:152240‑M2/3‑140 (MQ=255)                                                                                                                                                    |                                                                                                                                              AATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCATCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGA  >  NC_002947/2729503‑2729791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.