New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2791195 =	58 (1.070)	3 (0.060)	3/244	NT	5.9%	coding (353/1212 nt)	sstT	serine/threonine transporter SstT
	?	NC_002947	2791237 =	42 (0.830)					coding (311/1212 nt)	sstT	serine/threonine transporter SstT

GCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGCCATGAC  >  NC_002947/2791089‑2791367                                                                                                                                                     |                                                                                                                                        atcacggccaggaaacccacattcgcccgatcctctggctgtacctgctgggcacctttgccgcagcagtggtggccgtgtttgccagcatgctgtttccgtcgcaCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGt                                                                                                                                         >  8:165327‑M1/107‑149 (MQ=255)       ggCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACg                                                                                                                                   >  8:75680/1‑149 (MQ=255)         cccATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACgg                                                                                                                                  >  6:49971/1‑148 (MQ=255)          ccATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGa                                                                                                                                 >  5:5032/1‑148 (MQ=255)           cATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCGGGTGCGACGGaaa                                                                                                                               <  8:59026/149‑1 (MQ=255)            aTGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAAc                                                                                                                              <  6:5032/149‑1 (MQ=255)             tGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGTGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACa                                                                                                                             <  4:43640/149‑1 (MQ=255)             tGTCAGCAAGCCTATGAAGTTTGCGTTGAGCAGGGCATTGACCGGGTTGTCTAACGAGTTCAGCAACAGGTGCTGCAGCACTTCGGCGATGCAGCCTGGCTCGCTCATCGTGGCCTCGCTGTTGCTTATCGCCAGGTGCGACTGAAACa                                                                                                                             <  2:291878/149‑1 (MQ=255)                 aGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCAt                                                                                                                         <  7:75680/149‑1 (MQ=255)                    aCGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCt                                                                                                                      >  2:267955/1‑149 (MQ=255)                     cGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTg                                                                                                                     <  7:143108/149‑1 (MQ=255)                       ccGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGc                                                                                                                   <  4:100545/149‑1 (MQ=255)                         gATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCa                                                                                                                  >  5:98962/1‑148 (MQ=255)                               gTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACgg                                                                                                           >  3:177371/1‑149 (MQ=255)                                  ggCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGcc                                                                                                         <  5:177272/148‑1 (MQ=255)                                            aGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCGAACACGGCCACCACtgc‑tg‑‑c                                                                                           <  5:177314/149‑1 (MQ=255)                                                  ttGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCaaa                                                                                     <  1:42388/149‑1 (MQ=255)                                                     aCCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGt                                                                                  >  7:72821/1‑149 (MQ=255)                                                       cGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGc                                                                                        >  8:112037/1‑141 (MQ=255)                                                       cGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGc                                                                                        <  7:112037/141‑1 (MQ=255)                                                         gggtGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCGCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGcc‑‑c                                                                            <  2:16991/146‑1 (MQ=255)                                                              tCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑cagca                                                                        <  8:72821/148‑1 (MQ=255)                                                              tCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑cagca                                                                        <  5:49971/148‑1 (MQ=255)                                                                tACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑cagca                                                                        <  3:205443/146‑1 (MQ=255)                                                                tACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑cagca                                                                        >  4:205443/1‑146 (MQ=255)                                                                   cgcgTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTa                                                                    >  1:141709/1‑147 (MQ=255)                                                                          aGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCaga                                                            <  6:98962/148‑1 (MQ=255)                                                                            cAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCaaa                                                                                     <  8:309311/123‑1 (MQ=255)                                                                            cAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCaaa                                                                                     >  7:309311/1‑123 (MQ=255)                                                                                aGGTTCTGCAGCACTTCGGCGATGCCGACTGGCGCGCTCCGCGTGGCCTAGCTGGTGCTTAGCGCCAGGTTCGACGGAAACCGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCgg                                                     >  5:156671/1‑149 (MQ=255)                                                                                 ggTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCggg                                                    >  7:285717/1‑149 (MQ=255)                                                                                 ggTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCggg                                                    >  7:154599/1‑149 (MQ=255)                                                                                  gTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGc                                                                                                                           >  4:5543/1‑82 (MQ=255)                                                                                  gTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGc                                                                                                                           <  3:5543/82‑1 (MQ=255)                                                                                  gTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGc                                                   <  8:285717/149‑1 (MQ=255)                                                                                          gcaCTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTgg                                           <  8:154599/149‑1 (MQ=255)                                                                                                          acctggcgctaagcaccagcgaggccacgctgagcgcgccaggTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTgat                           >  8:165327‑M2/44‑148 (MQ=255)                                                                                                            ctggcgctaagcaccagcgaggccacgctgagcgcgccaggTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTgg                                  <  1:292906‑M2/99‑1 (MQ=255)                                                                                                            ctggcgctaagcaccagcgaggccacgctgagcgcgccaggTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTgg                                  >  2:292906‑M2/42‑140 (MQ=255)                                                                                                            CTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGa                         <  6:337000‑M1/149‑1 (MQ=255)                                                                                                                 agcaccAGCGAGGCCACGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACAGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGtt                    >  5:277886/6‑149 (MQ=255)                                                                                                                       aGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGCTTGTAGGGCAAAGGTGCCGGCAGCAGTTACAGCCAGAGGATCGGGCGATTGTGGGTTTCGTGGCCTTGACGATGTTTg                   >  1:107330/1‑149 (MQ=255)                                                                                                                               cTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGCCa      >  3:331705/1‑149 (MQ=255)                                                                                                                               cTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGCCa      >  6:284890/1‑149 (MQ=255)                                                                                                                                    tgttGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTg                   <  3:143637/128‑1 (MQ=255)                                                                                                                                    tGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTg                   >  4:143637/1‑131 (MQ=255)                                                                                                                                     ggTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGCCATGAc  >  5:329075/1‑147 (MQ=255)                                                                                                                                                ccaggTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGc        >  5:273112‑M2/6‑130 (MQ=255)                                                                                                                                                ccaggTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGc        <  6:273112‑M2/125‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        GCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAGGTGCGACGGAAACAGCATGCTGGCAAACACGGCCACCACTGC‑TG‑‑CGGCAAAGGTGCC‑‑CAGCAGGTACAGCCAGAGGATCGGGCGAATGTGGGTTTCCTGGCCGTGACGATGGTTGGCGACCGAAGCCATGAC  >  NC_002947/2791089‑2791367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.