New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2914562	45 (0.830)	4 (0.080)	4/250	NT	8.6%	coding (3582/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2914625	42 (0.810)					coding (3645/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin

TGGCGGCGCCACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGCTTGA  >  NC_002947/2914478‑2914762                                                                                                                                                    |                                                                                                                                           tGGCGGCGCCACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGg                                                                                                                                           >  1:125618‑M2/1‑148 (MQ=255) tGGCGGCGCCACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGg                                                                                                                                           >  4:271948‑M2/1‑148 (MQ=255)    cggcgCCACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGggtg                                                                                                                                        >  6:130675‑M2/1‑145 (MQ=255)          cACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGAt                                                                                                                                  >  4:35563/1‑148 (MQ=255)              ggCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCt                                                                                                                             <  8:111649/149‑1 (MQ=255)               gCAGTGCGCTGACCAACGTGGCGCTGATACGTGTGCTGCAGCAGTTCCTTGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCTACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGTGT‑GGCGATGACCTg                                                                                                                            <  8:206400/149‑1 (MQ=255)               gCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTg                                                                                                                            <  7:216789/149‑1 (MQ=255)                cAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTgg                                                                                                                           <  3:321379/149‑1 (MQ=255)                            cAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGAc                                                                                                                >  8:290127/1‑148 (MQ=255)                            cAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGAc                                                                                                                >  6:311233/1‑148 (MQ=255)                             aaCGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGAc                                                                                                                >  1:236543/1‑147 (MQ=255)                                   gcgcTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCt                                                                                                        >  7:18687/1‑149 (MQ=255)                                    cgcTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTc                                                                                                       <  3:35563/149‑1 (MQ=255)                                         aTACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTg                                                                                                                            >  7:100074/1‑123 (MQ=255)                                         aTACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTg                                                                                                                            <  8:100074/123‑1 (MQ=255)                                            cGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTgc                                                                                                <  8:18687/148‑1 (MQ=255)                                            cGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTgc                                                                                                <  2:236543/148‑1 (MQ=255)                                                    gcagcaGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCg                                                                                       >  8:245361/1‑149 (MQ=255)                                                     cagcagTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCgt                                                                                      <  8:309562/149‑1 (MQ=255)                                                        cagTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTa                                                                                   >  7:144408/1‑149 (MQ=255)                                                            tCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTgc                                                                                                <  2:223947/132‑1 (MQ=255)                                                            tCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTgc                                                                                                >  1:223947/1‑132 (MQ=255)                                                                 gCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTgg                                                                          >  2:231294/1‑149 (MQ=255)                                                                  cGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGc                                                                         <  3:258723/149‑1 (MQ=255)                                                                   ggATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCACCGTGCGCATCGCCGTGTACGCCCCTGGc                                                                         >  4:258723/1‑148 (MQ=255)                                                                       gCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGCCTAGTGGCTCACCGTGCGCATCGCAGTGTACGCCCCTGGCGACgg                                                                    >  7:142678/1‑148 (MQ=255)                                                                        ccGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGt                                                                    <  7:245361/148‑1 (MQ=255)                                                                               gCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGggtgggcaagccggcatccgccaggaactgctgcagcccacgtatcagcgccacgttggtcagcgcactgccggtggcg                                                             <  4:224106‑M2/149‑80 (MQ=255)                                                                                cccACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGggtgggcaagccggcatccgccaggaactgctgcagcccacgtatcagcgccacgttggtcagcgcactgccggt                                                                 >  1:176937‑M2/1‑69 (MQ=255)                                                                                cccACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGggtgggcaagccggcatccgccaggaactgctgcagcccacgtatcagcgccacgttggtcagcgcactgccggt                                                                 <  2:176937‑M2/144‑76 (MQ=255)                                                                                 ccaccaCCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACAcc                                                          >  4:319937/1‑149 (MQ=255)                                                                                  caccacCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACATGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCg                                                         >  6:317287/1‑149 (MQ=255)                                                                                      accGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAAcc                                                               <  4:299399/139‑1 (MQ=255)                                                                                      accGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAAcc                                                               >  3:299399/1‑139 (MQ=255)                                                                                         ggCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGa                                                  <  4:260587/149‑1 (MQ=255)                                                                                              tGCCACCGTCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATc                                              <  4:216833/148‑1 (MQ=255)                                                                                                ccACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGc                                            <  1:231294/148‑1 (MQ=255)                                                                                                      gCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTc                                     >  4:304590/1‑149 (MQ=255)                                                                                                        aaCATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTAGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGAc                                                                      >  8:264331/1‑114 (MQ=255)                                                                                                        aaCATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTAGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGAc                                                                      <  7:264331/114‑1 (MQ=255)                                                                                                                       ggcAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACAt                    <  7:290127/149‑1 (MQ=255)                                                                                                                              gCAGCGACCTGATCGAAGGCCGGggtgggcaagccggcatccgccaggaactgctgcagcccacgtatcagcgccacgttggtcagcgcactgccggtggcgccgccatggttgagaatggtcacggcatcgacgtcgtcgcccttga               >  3:224106‑M2/1‑23 (MQ=255)                                                                                                                                aGCGACCTGATCGAAGGCCGGGGTGGGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGt            >  1:3478/1‑149 (MQ=255)                                                                                                                                    aCCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGAGCATCGCCGTGTACGCCACTGGCGACGTCAACCACAACGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTACGTTCATg       >  1:73144/1‑149 (MQ=255)                                                                                                                                     ccTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGc      <  2:3478/149‑1 (MQ=255)                                                                                                                                     ccTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGc      <  3:319937/149‑1 (MQ=255)                                                                                                                                        gATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCg             >  3:316447/1‑139 (MQ=255)                                                                                                                                        gATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCg             <  4:316447/139‑1 (MQ=255)                                                                                                                                        gATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGCtt    >  5:329056/1‑148 (MQ=255)                                                                                                                                         aTCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGCTTGa  >  4:68883/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                           TGGCGGCGCCACCGGCAGTGCGCTGACCAACGTGGCGCTGATACGTGGGCTGCAGCAGTTCCTGGCGGATGCCGGCTTGCCCACCACCGGCTTTGCCACCGGCAACATCATGCTCGGCGGCAATGGCAGCGACCTGATCGAAGGCCGGGGT‑GGCGATGACCTGGTCGATGGCGACAAGTGGCTCAACGTGCGCATCGCCGTGTACGCCCCTGGCGACGTCAACCACACCGGCCCGGAAATCGCCAGCTTCGACAGCATGGCCGACATGATTCCGTTCATGCTTGA  >  NC_002947/2914478‑2914762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.