New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3077686 =	61 (1.130)	5 (0.100)	4/248	NT	9.4%	coding (167/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077751 =	38 (0.740)					coding (102/951 nt)	PP_2687	hypothetical protein

GGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTACCGCCGCCTTGC  >  NC_002947/3077605‑3077898                                                                                                                                                   |                                                                                                                                                      gggTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAg                                                                                                                                                     >  1:323007/1‑149 (MQ=255) gacctgtactggatgtcccgctacctggagcgtgcagaaaaccttgcacgcatgctcgaggtcagctactcgctatcgctgATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAg                                                                                                                                                     >  8:103560‑M1/82‑149 (MQ=255)   gTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGc                                                                                                                                                    >  4:9950/1‑148 (MQ=255)       gtggCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAg                                                                                                                                               >  2:86214/1‑149 (MQ=255)                  ggCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGa                                                                                                                                   <  8:140961/149‑1 (MQ=255)                  ggCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGa                                                                                                                                   <  1:7681/149‑1 (MQ=255)                  ggCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCGGGGGCAGCAGCGATAG‑CGAGTCGCTGa                                                                                                                                   >  2:280416/1‑149 (MQ=255)                     gaagaaGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGCGCATCAGCGATAG‑CGAGTAGCTGACCt                                                                                                                                >  5:166680/1‑149 (MQ=255)                        gaagTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGa                                                                                                                             <  2:323007/149‑1 (MQ=255)                                gcaTGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGt                                                                                                                     <  1:151280/149‑1 (MQ=255)                                gcaTGCGCTCGGTGTCGAGTTCCATGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGt                                                                                                                     >  8:305625/1‑149 (MQ=255)                                     cgcTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCaa                                                                                                                 <  5:24767/148‑1 (MQ=255)                                      gcTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAg‑g                                                                                                              >  5:171302/1‑149 (MQ=255)                                          ggTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑Gtttt                                                                                                          <  6:210185/149‑1 (MQ=255)                                           gtgtCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTc                                                                                                         <  1:237775/149‑1 (MQ=255)                                            tgtCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCt                                                                                                        >  7:126585/1‑149 (MQ=255)                                                     ccTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTc                                                                                                <  6:166680/148‑1 (MQ=255)                                                      cTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTc                                                                                                >  1:180791/1‑147 (MQ=255)                                                      cTTGTGGCGACGCAGGTAGTCATCCAGCATGCACGAGGCCATCAGAGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTc                                                                                                >  1:234752/1‑147 (MQ=255)                                                       ttGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAg                                                                                             >  5:33485/1‑149 (MQ=255)                                                                   aGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACAt                                                                                 >  6:80425/1‑149 (MQ=255)                                                                    ggTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATc                                                                                >  2:95362/1‑149 (MQ=255)                                                                    ggTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATc                                                                                >  8:286489/1‑149 (MQ=255)                                                                         tCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTa                                                                           >  3:119386/1‑149 (MQ=255)                                                                           aTCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTa                                                                           >  1:341261/1‑147 (MQ=255)                                                                           aTCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTAc                                                                          <  7:305625/148‑1 (MQ=255)                                                                              cAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGt                                                                      <  2:341261/149‑1 (MQ=255)                                                                               ctgatgccccaggccgggcgcagcgacggccatgccgaactggcaatgtcgctgatggcctcgggcatCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTc                                                                     >  8:103560‑M2/69‑149 (MQ=255)                                                                                   TGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGaa                                                                 >  3:9950‑M1/1‑149 (MQ=255)                                                                                     CCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAg                                                                >  5:80425‑M1/1‑148 (MQ=255)                                                                                      cccaggccgggcgcagcgacggccatgccgaactggcaatgtcgctgatggcctcgggcatCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCg                                                              >  7:288027‑M2/62‑149 (MQ=255)                                                                                      cccaggccgcgcgcagcgaccgccatgccgaactggcaatgtcgctgatggcctcgggcatCAGCGATAG‑CGAGTAGCTGACCTCGAGCATCCGTGCAAG‑GTTTTCTGAACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCg                                                              >  8:302334‑M2/62‑149 (MQ=255)                                                                                       CGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCgg                                                             >  6:171302‑M1/1‑149 (MQ=255)                                                                                        gAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAGCGTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCgg                                                             <  1:86214/149‑1 (MQ=255)                                                                                              aTCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTcgcg                                                       >  6:14763/1‑148 (MQ=255)                                                                                                  gCGACATTGCCATTTCGTCTTGGGTGTCGCTGCGCCGGGCGTGTGTAATCAGCGATAGAGGATTAGTTTACCTAGTGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAg                                                   <  1:280416/149‑1 (MQ=255)                                                                                                    gACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCAt                                                <  8:126585/149‑1 (MQ=255)                                                                                                     gcgacggccatgccgaactggcaatgtcgctgatggcctcgggcatCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATg                                               <  7:103560‑M2/103‑1 (MQ=255)                                                                                                     aCATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATg                                               <  4:119386/149‑1 (MQ=255)                                                                                                       aTTGCCAGTTCGGCATGGTCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGc                                             <  3:59760/149‑1 (MQ=255)                                                                                                            cAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAC‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGt                                        >  4:338693/1‑149 (MQ=255)                                                                                                             aGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGtc                                       <  3:338693/149‑1 (MQ=255)                                                                                                                  ggCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGtcctcc                                   <  2:234752/148‑1 (MQ=255)                                                                                                                  ggCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTcca                                  <  8:25648/149‑1 (MQ=255)                                                                                                                          caatgtcgctgatggcctcgggcatCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAg                          <  8:288027‑M2/124‑1 (MQ=255)                                                                                                                          cGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAg                          <  6:33485/149‑1 (MQ=255)                                                                                                                          cGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAg                          <  7:286489/149‑1 (MQ=255)                                                                                                                                  cgcCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCtt                  <  5:14763/149‑1 (MQ=255)                                                                                                                                    cccGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGGGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCTTgg                <  2:226133/149‑1 (MQ=255)                                                                                                                                            ggggCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTAccgccg        >  6:247839/1‑149 (MQ=255)                                                                                                                                                  tCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTACCGCCGCCTTGc  <  5:172728‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGGCCGTCGCTGCGCCCGGCCTGGGGCATCAGCGATAG‑CGAGTAGCTGACCTCGAGCATGCGTGCAAG‑GTTTTCTGCACGCTCCAGGTAGCGGGACATCCAGTACAGGTCGGAAGCGGTTCGCGAAAGCATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTACCGCCGCCTTGC  >  NC_002947/3077605‑3077898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.