New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3243408 =	52 (0.960)	5 (0.100)	3/250	NT	10.3%	coding (1485/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	3243481 =	37 (0.710)					coding (1558/2289 nt)	PP_2839	hypothetical protein

TTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCT  >  NC_002947/3243334‑3243623                                                                                                                                                      |                                                                                                                                               ttGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGgctgct                                                                                                                                               >  6:296285/1‑149 (MQ=255) ttGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGgctgct                                                                                                                                               <  4:35585/149‑1 (MQ=255)  tgtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGctgctg                                                                                                                                              >  2:248357‑M1/74‑149 (MQ=255)  ggtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcttgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGctgctg                                                                                                                                              >  1:68446‑M1/74‑149 (MQ=255)    cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTgg                                                                                                                                             >  1:292292/1‑148 (MQ=255)    cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGGTGCCGAGCTGGTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCATAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGctgctg                                                                                                                                              <  1:262893/148‑1 (MQ=255)            ctaTCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCATGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGcaccac                                                                                                                                       <  4:259816/146‑1 (MQ=255)                 aGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAg                                                                                                                               >  8:234835/1‑149 (MQ=255)                   gCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAggc                                                                                                                             <  1:133845/149‑1 (MQ=255)                   gCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAggc                                                                                                                             <  4:61240/149‑1 (MQ=255)                        gCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGgcgc                                                                                                                        >  1:29632/1‑149 (MQ=255)                         cAGTTCTGCCAGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGgcgc                                                                                                                        <  1:136330/148‑1 (MQ=255)                             tCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAgt                                                                                                                   >  8:295875/1‑149 (MQ=255)                               tGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAgtgt                                                                                                                 >  2:330142/1‑149 (MQ=255)                                 ccGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGa                                                                                                               >  6:34290/1‑149 (MQ=255)                                      ttGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTg                                                                                                          <  7:234835/149‑1 (MQ=255)                                          cGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGtttt                                                                                                      >  5:114074/1‑149 (MQ=255)                                             gCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTcc                                                                                                    <  1:267184/149‑1 (MQ=255)                                                 ttCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCAc                                                                                               >  7:273117/1‑149 (MQ=255)                                                    gacgaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGTGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGtt                                                                                            >  7:118189/1‑149 (MQ=255)                                                       gaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAg                                                                                         >  6:181166/1‑149 (MQ=255)                                                                   ttCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACtt                                                                             <  8:273117/149‑1 (MQ=255)                                                                     cGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTc                                                                            <  7:295875/148‑1 (MQ=255)                                                                        cATCAGCCAGCGCCCGGGCCCGCGCA‑AGCGGCGGCTGGCCAGGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACa                                                                        <  6:307457/149‑1 (MQ=255)                                                                        cATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGgctgct                                                                                                                                               >  2:22298/1‑78 (MQ=255)                                                                        cATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGgctgct                                                                                                                                               <  1:22298/78‑1 (MQ=255)                                                                        cATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACa                                                                        <  2:29632/149‑1 (MQ=255)                                                                          cagcagccgcgccggggtgacattgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACa                                                                        >  2:248357‑M2/77‑149 (MQ=255)                                                                          cagcagccgcgccggggtgacattgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCAAGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTacc                                                                        >  1:68446‑M2/77‑148 (MQ=255)                                                                             GCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGAc                                                                   >  4:204208‑M1/1‑149 (MQ=255)                                                                             GCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGAc                                                                   >  5:296285‑M1/1‑149 (MQ=255)                                                                               gccgcgccggggtgacattgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGAc                                                                   >  3:20855‑M2/72‑149 (MQ=255)                                                                                agcGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACctg                                                                >  1:83485/1‑149 (MQ=255)                                                                                    ccAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTgg                                                            <  3:180502/149‑1 (MQ=255)                                                                                      aGGGCCCGCGCA‑AGCGGTGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGc                                                          <  8:118189/149‑1 (MQ=255)                                                                                         gCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATg                                                       >  8:106890/1‑149 (MQ=255)                                                                                          cccGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCGCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGc                                                      <  6:114074/149‑1 (MQ=255)                                                                                           ccGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTg                                                                                                          <  8:257392/96‑1 (MQ=255)                                                                                           ccGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTg                                                                                                          >  7:257392/1‑96 (MQ=255)                                                                                            cgcgCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGc                                                      >  7:257058/1‑147 (MQ=255)                                                                                               gcA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGcc                                                 <  2:83485/149‑1 (MQ=255)                                                                                                ttgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGc                                                  <  1:248357‑M2/95‑1 (MQ=255)                                                                                                ttgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGc                                                  <  4:20855‑M2/95‑1 (MQ=255)                                                                                                          gcTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCct                                       <  8:257058/149‑1 (MQ=255)                                                                                                              gCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCctggc                                    <  2:292292/148‑1 (MQ=255)                                                                                                              gCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCctgg                                     <  8:9341/147‑1 (MQ=255)                                                                                                                cACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCctggctg                                  >  2:218443/1‑148 (MQ=255)                                                                                                                     tgtgCCTGCGCAATGTCA‑CCCCGGCGCGGCTGTTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTg                            >  2:160881/1‑149 (MQ=255)                                                                                                                          cTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTgg                                                            >  7:134180/1‑112 (MQ=255)                                                                                                                          cTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTgg                                                            <  8:134180/112‑1 (MQ=255)                                                                                                                                    tCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGt             <  1:330142/149‑1 (MQ=255)                                                                                                                                     cA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTg            <  5:34290/149‑1 (MQ=255)                                                                                                                                               gcgGCTGTTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGc   <  1:160881/149‑1 (MQ=255)                                                                                                                                                cgGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCt  <  5:181166/149‑1 (MQ=255)                                                                                                                                                 ggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGc           <  1:145741‑M2/134‑1 (MQ=255)                                                                                                                                                 ggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGc           >  2:145741‑M2/6‑139 (MQ=255)                                                                                                                                                      |                                                                                                                                               TTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCA‑AGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCA‑CCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCT  >  NC_002947/3243334‑3243623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.