New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3590864 =	41 (0.760)	4 (0.080)	3/244	NT	10.2%	coding (60/1080 nt)	PP_3169	membrane protein
	?	NC_002947	3590926 =	32 (0.630)					coding (122/1080 nt)	PP_3169	membrane protein

GAAACGACTCTTTCAGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAGGGGTATACCTTGCCCAGGCT  >  NC_002947/3590778‑3591073                                                                                                                                                     |                                                                                                                                                     ggccaggccggtgagcacgaacaacgagtgggagaagccgcgatgataagtcatctgcgacaccgggtcggcatagcgaatgatcaCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGAtgt                                                                                                                                                      >  2:307209‑M1/87‑149 (MQ=255)  gcgaggccggtgagcacgaacaacgagtgggagtagccgcgatgataagtcatctgcgacaccgggtcggcatagcgaatgatcaCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGAtgt                                                                                                                                                      >  7:211736‑M1/86‑148 (MQ=255)        ctctTTCAGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCAtt                                                                                                                                               <  3:6420/149‑1 (MQ=255)           tttCAGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTc                                                                                                                                              <  3:187793/147‑1 (MQ=255)               aGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTAt                                                                                                                                         <  4:135573/148‑1 (MQ=255)               aGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATg                                                                                                                                        >  4:149770/1‑149 (MQ=255)                                  tCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGAt                                                                                                                     >  6:156722/1‑149 (MQ=255)                                     aTCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCg                                                                                                                                <  4:155414/135‑1 (MQ=255)                                     aTCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCg                                                                                                                                >  3:155414/1‑135 (MQ=255)                                                 gTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCgg                                                                                                     <  7:232464/149‑1 (MQ=255)                                                     ttGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGTTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGa                                                                                                                      <  5:73170/129‑1 (MQ=255)                                                     ttGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGTTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGa                                                                                                                      >  6:73170/1‑129 (MQ=255)                                                        gcgcggcgcTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTtctc                                                                                               <  3:107115/148‑1 (MQ=255)                                                            ggagcTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACTCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACA‑TATCAACGCGGCTTCTCCCAc                                                                                           >  4:208146/4‑148 (MQ=255)                                                                   cAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCgttgtt                                                                                   >  3:144371/1‑149 (MQ=255)                                                                    atgggACCGTGCTCGGGGGCATCCTGGGCCGACGCTCGCTGCTGTTTGGTGCATCAGTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGTCTTCTCCCACTCGTTGTTc                                                                                  <  3:208146/147‑1 (MQ=255)                                                                           cGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCa                                                                           >  2:268577/1‑149 (MQ=255)                                                                                  gggCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCggc                                                                      <  3:149770/147‑1 (MQ=255)                                                                                   ggCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCggcctg                                                                   >  2:267715/1‑149 (MQ=255)                                                                                      acatccaggtccggcagcgtgcccagtgctgcaccatacagcagcgagcgtcggccctggatgTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCggcctggcc                                                                >  2:307209‑M2/64‑149 (MQ=255)                                                                                      acatccaggtccggcagcgtgcccagtgctgcaccatacagcagcgagcgtcggccctggatgTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTACTCCCACTCGTTGTTCGTGCTCACCggcctcgc                                                                 >  7:211736‑M2/64‑148 (MQ=255)                                                                                          ccaggtccggcagcgtgcccagtgctgcaccatacagcagcgagcgtcggccctggatgTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGc                                                            >  1:177715‑M2/60‑149 (MQ=255)                                                                                              GGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGtt                                                        <  4:74975‑M1/149‑1 (MQ=255)                                                                                               gCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGc                                                                              <  3:94883/126‑1 (MQ=255)                                                                                               gCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCCGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGc                                                                              >  4:94883/1‑126 (MQ=255)                                                                                                ccGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACTCTATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTg                                                       <  1:267715/149‑1 (MQ=255)                                                                                                     gctcgctGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCctgg                                                 <  1:268577/149‑1 (MQ=255)                                                                                                           cccagtgctgcaccatacagcagcgagcgtcggccctggatgTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTc                                           <  2:177715‑M2/107‑1 (MQ=255)                                                                                                             ctgTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCaa                                         >  5:37521/1‑149 (MQ=255)                                                                                                                tATGGTGCAGCACTGGGCACGCTGCCTGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAg                                      <  4:144371/149‑1 (MQ=255)                                                                                                                  tGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGgc                                    >  1:249521/1‑149 (MQ=255)                                                                                                                    gTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAAc                                        >  7:196442/1‑143 (MQ=255)                                                                                                                    gTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAAc                                        <  8:196442/143‑1 (MQ=255)                                                                                                                    gTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGgcgc                                  >  3:291554/1‑149 (MQ=255)                                                                                                                    gTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGgcgc                                  >  3:286772/1‑149 (MQ=255)                                                                                                                               ggCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGc                         >  5:306243/1‑147 (MQ=255)                                                                                                                                  aCGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAggg                    <  4:291554/149‑1 (MQ=255)                                                                                                                                  aCGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAggg                    <  4:286772/149‑1 (MQ=255)                                                                                                                                      tGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAGGGGta                 >  1:224173/1‑148 (MQ=255)                                                                                                                                                 gatgTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAGGGGTATACCTTGCCCAg     <  1:307209‑M2/145‑1 (MQ=255)                                                                                                                                                     tgATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCGGGCAAGGTATACCCCTTGccgggcca  <  6:37521/148‑7 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAAACGACTCTTTCAGGAATCCCCACCTTGGACTCCATCACCCAAGCCGTACTTGGCGCGGCGCTGCAAGGGACCGTGCTCGGGCGCATCCAGGGCCGACGCTCGCTGCTGTATGGTGCAGCACTGGGCACGCTGCCGGACCTGGATGTGATCATTCGCTATGCCGACCCGGTGTCGCAGATGACT‑TATCATCGCGGCTTCTCCCACTCGTTGTTCGTGCTCACCGGCCTGGCCTTGCTGTTGGCCTGGCTGGTCAACAGGCGCTGGCCCGGCAAGGGGTATACCTTGCCCAGGCT  >  NC_002947/3590778‑3591073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.