New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3999919 =	49 (0.910)	4 (0.080)	4/252	NT	8.3%	coding (604/987 nt)	PP_3528	ABC transporter substrate‑binding protein
	?	NC_002947	3999964 =	41 (0.780)					coding (649/987 nt)	PP_3528	ABC transporter substrate‑binding protein

AAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTGGCCGCGCTGCT  >  NC_002947/3999820‑4000109                                                                                                                                                 |                                                                                                                                                  aaGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCgg                                                                                                                                               >  8:107168/1‑149 (MQ=255) aaGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCgg                                                                                                                                               >  8:207839/1‑149 (MQ=255) aaGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCgg                                                                                                                                               >  4:142941/1‑149 (MQ=255)    gACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCt                                                                                                                                            >  8:15239/1‑149 (MQ=255)     aCATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGAGACCATTTGGGACACGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTg                                                                                                                                           <  1:273244/149‑1 (MQ=255)      cATTACCCCCGCATACGGCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGt                                                                                                                                          <  3:263090/149‑1 (MQ=255)       aTTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTc                                                                                                                                         <  2:63281/149‑1 (MQ=255)         tACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGc                                                                                                                                              >  7:66836/1‑142 (MQ=255)         tACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGc                                                                                                                                              <  8:66836/142‑1 (MQ=255)         tACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCt                                                                                                                                            <  6:16710/144‑1 (MQ=255)         tACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCt                                                                                                                                            >  5:16710/1‑144 (MQ=255)           cccccGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCcaac                                                                                                                                     <  7:107168/149‑1 (MQ=255)              ccGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGc                                                                                                                                              >  6:151092/1‑137 (MQ=255)              ccGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGc                                                                                                                                              <  5:151092/137‑1 (MQ=255)                  agaaggttttcagcagagcacggtgctggtcggcaaagctggctgtggacaggtagaaggtgcggttgttggacaggccgctGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGc                                                                                                                                                 >  4:209065‑M1/83‑130 (MQ=255)                  agaaggttttcagcagagcacggtgctggtcggcaaagctggctgtggacaggtagaaggtgcggttgttggacaggccgctGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGc                                                                                                                                                 <  3:209065‑M1/48‑1 (MQ=255)                      gTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTcc                                                                                                                                        >  6:22297/1‑135 (MQ=255)                      gTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTcc                                                                                                                                        <  5:22297/135‑1 (MQ=255)                         aacaaTGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTa                                                                                                                       <  4:185271/149‑1 (MQ=255)                         aacaaTGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTa                                                                                                                       >  5:7049/1‑149 (MQ=255)                                   ccgATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCcaca                                                                                                             <  6:306753/149‑1 (MQ=255)                                         ccGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCAcagccag                                                                                                        <  7:15239/148‑1 (MQ=255)                                                     tGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAg                                                                                           >  1:2900/1‑149 (MQ=255)                                                            gggCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCACCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACTACCGCACCGTCTACATGTCCACAGCCAGCTTTGCCGACCCGCACCGTg                                                                                    >  6:189332/1‑149 (MQ=255)                                                                   gTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTctgct                                                                             >  7:17457/1‑149 (MQ=255)                                                                       aGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGaa                                                                          >  6:198137/1‑148 (MQ=255)                                                                         gCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAAc                                                                       >  2:143476/1‑149 (MQ=255)                                                                            gTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACctt                                                                    <  2:2900/149‑1 (MQ=255)                                                                            gTGACCCTTTCGGACCCGTTCCTCGCCGCCGCAGAAAGCCACCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACct                                                                     >  8:173942/1‑148 (MQ=255)                                                                              gACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACcttct                                                                  >  1:219944/1‑149 (MQ=255)                                                                                 ccTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACctt                                                                    >  4:56411/1‑144 (MQ=255)                                                                                 ccTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACctt                                                                    <  3:56411/144‑1 (MQ=255)                                                                                 ccTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGATCTGCTGAAAACCTTCTTTg                                                               >  1:92924/1‑149 (MQ=255)                                                                                          cccGTTCCTCGCCGCCGCAGAAAGCCAGCCAGTGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCGAACAACCGCACCTTCTACCTGTCCCCAGCCAGCTTTGCCGACCAGCACCGTGCTATGCTGAAAACCTTCTTTGCCGAGCTgg                                                      >  6:332675/1‑149 (MQ=255)                                                                                          cccGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTgg                                                      <  8:17457/149‑1 (MQ=255)                                                                                           ccGTTCCTCGCCGCCGCAGAAAGCCAACCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTACCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTggg                                                     >  4:159328/1‑149 (MQ=255)                                                                                                 gctgccgtcgcgcaggttcttcagccctggctggctttctgcggcggcAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACcttct                                                                  <  3:209065‑M2/82‑1 (MQ=255)                                                                                                 gctgccgtcgcgcaggttcttcagccctggctggctttctgcggcggcAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACcttct                                                                  >  4:209065‑M2/49‑130 (MQ=255)                                                                                                  tCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGt                                               >  8:72955/1‑148 (MQ=255)                                                                                                   cgccgccgcAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGt                                               >  4:196368/1‑147 (MQ=255)                                                                                                    GCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAg                                            <  5:24027‑M1/149‑1 (MQ=255)                                                                                                     ccgtcgcgcaggttcttcagccctggctggctttctgcggcggcAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTgg                                                      <  4:262435‑M2/94‑1 (MQ=255)                                                                                                     ccgtcgcgcaggttcttcagccctggctggctttctgcggcggcAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTgg                                                      >  3:262435‑M2/45‑138 (MQ=255)                                                                                                           cAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTgg                                     <  5:198137/149‑1 (MQ=255)                                                                                                                    agccagGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGcc                            <  7:207839/149‑1 (MQ=255)                                                                                                                            cTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGc                    <  6:7049/149‑1 (MQ=255)                                                                                                                                 gaaCCTGCGCGACTGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTTGGCCAACGCCAAGCCTGCCGaa                <  2:92924/148‑1 (MQ=255)                                                                                                                                   aCCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGt              <  6:24027/148‑1 (MQ=255)                                                                                                                                   aCCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTg             <  1:143476/149‑1 (MQ=255)                                                                                                                                    ccTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTgg            >  7:216995/1‑149 (MQ=255)                                                                                                                                     cTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTGGc           <  2:219944/149‑1 (MQ=255)                                                                                                                                          cgACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCTTGCTCTGCTGAAAACCTTCTTTGCCGAGCTTGGCAAGGTCAGCCAGTGGGCCAACGACAAGCCTGCCGAAGTGGCCgcgc      <  5:189332/149‑1 (MQ=255)                                                                                                                                              ggcAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTGGCCGCgctgct  <  8:40476‑M2/146‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  AAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCGACGGCAGCGGCCTGTCCAACAACCGCACCTTCTACCTGTCCACAGCCAGCTTTGCCGACCAGCACCGTGCTCTGCTGAAAACCTTCTTTGCCGAGCTGGGCAAGGTCAGCCAGTGGGCCAACGCCAAGCCTGCCGAAGTGGCCGCGCTGCT  >  NC_002947/3999820‑4000109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.