New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4027684	37 (0.680)	5 (0.100)	5/246	NT	11.9%	coding (746/1407 nt)	PP_3552	two‑component system sensor histidine kinase
	?	NC_002947	= 4027698	39 (0.760)					coding (732/1407 nt)	PP_3552	two‑component system sensor histidine kinase

CGCTGATACGCTGCAGGCCCTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGAACCAACGG  >  NC_002947/4027553‑4027845                                                                                                                                                     |                                                                                                                                                    cGCTGATACGCTGCAGGCCCTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCtcg                                                                                                                                                  <  1:229761‑M2/149‑4 (MQ=255)  gCTGATACGCTGCAGGCCCTGGCTTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCtcgc                                                                                                                                                 >  2:83712‑M2/1‑145 (MQ=255)            tGCAGGCCCTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGc                                                                                                                                       >  7:223029/1‑149 (MQ=255)              cAGGCCCTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGc                                                                                                                                       >  1:120966/1‑147 (MQ=255)                    cTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCggg                                                                                                                               <  8:84804/149‑1 (MQ=255)                       gCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCAc                                                                                                                            >  2:234699/1‑149 (MQ=255)                            cccGCTCGTGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGAGCTGGCCTCGGGCA‑cgcccacgagatcaatcag                                                                                                                                   <  2:264183‑M2/139‑20 (MQ=255)                            cccGCTCGTGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGAGCTGGCCTCGGGCA‑cgcccacgagatcaatcag                                                                                                                                   >  1:264183‑M2/1‑120 (MQ=255)                            cccGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTgc                                                                                                                       <  3:224090/149‑1 (MQ=255)                            cccGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTCACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTgc                                                                                                                       <  1:6471/149‑1 (MQ=255)                                cTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGAGCTGGCCTCGGGCA‑cgcccacgagatcaatcagccactgg                                                                                                                            >  5:276834‑M2/1‑116 (MQ=255)                                cTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGAGCTGGCCTCGGGCA‑cgcccacgagatcaatcagccactgg                                                                                                                            <  6:276834‑M2/142‑27 (MQ=255)                                  cgcgcgCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAgg                                                                                                                 >  7:171726/1‑149 (MQ=255)                                        ccTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTcc                                                                                                           <  2:69007/149‑1 (MQ=255)                                            gggATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTgcg                                                                                                       <  2:120966/149‑1 (MQ=255)                                              gATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAg                                                                                                                                    >  2:142607/1‑118 (MQ=255)                                              gATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAg                                                                                                                                    <  1:142607/118‑1 (MQ=255)                                                       ccAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATgcg                                                                                             >  4:103172/1‑148 (MQ=255)                                                        cAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATgcgc                                                                                            >  6:342516/1‑148 (MQ=255)                                                            cccTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGt                                                                                       <  5:342516/149‑1 (MQ=255)                                                              cTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGa                                                                                     >  4:281892/1‑149 (MQ=255)                                                              cTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGa                                                                                     >  6:305617/1‑149 (MQ=255)                                                                    gTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTcgc                                                                               <  3:281892/149‑1 (MQ=255)                                                                    gTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTcgc                                                                               <  5:305617/149‑1 (MQ=255)                                                                        cGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGAt                                                                                    <  5:248644/140‑1 (MQ=255)                                                                        cGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGAt                                                                                    >  6:248644/1‑140 (MQ=255)                                                                          cTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGaca                                                                         <  8:223029/149‑1 (MQ=255)                                                                               tGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCt                                                                     >  8:255522/1‑148 (MQ=255)                                                                                   gTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCCGAAGGTGAGTTCGCGGGACACGCTGacca                                                                >  4:204263/1‑149 (MQ=255)                                                                                      ggCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGaccacc                                                              <  7:255522/148‑1 (MQ=255)                                                                                      ggCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGaccacc                                                              <  1:234699/148‑1 (MQ=255)                                                                                        cATAGTTGACCACCGCGGCCAGTGGCTGATTGATCCTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTc                                                            >  1:221492/1‑149 (MQ=255)                                                                                         aTAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTcca                                                          >  1:323678/1‑149 (MQ=255)                                                                                         aTAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTcca                                                          >  2:232601/1‑149 (MQ=255)                                                                                         aTAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTcca                                                          >  1:130891/1‑149 (MQ=255)                                                                                               gACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCaccacc                                                     <  6:323548/148‑1 (MQ=255)                                                                                                    ccGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACg                                                                       >  5:347953/1‑125 (MQ=255)                                                                                                    ccGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACg                                                                       <  6:347953/125‑1 (MQ=255)                                                                                                       cgGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGgtg                                            <  3:103172/149‑1 (MQ=255)                                                                                                       cgGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGgtg                                            <  2:229761/149‑1 (MQ=255)                                                                                                          ccAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAg                                         >  7:160762/1‑149 (MQ=255)                                                                                                                            tcGTGGGCGA‑‑TGCCCGAGGCCAGCtcgcccacgagatcaatcagccactggccgcggtggtcaactatgccaacgccagtcagcgttacctgcagggcctggaacgtgatccccaggcgcgcgagcgggtaggccagggcctgcagcg                         <  6:64795‑M2/148‑125 (MQ=255)                                                                                                                              gTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGc                           <  2:323678/144‑1 (MQ=255)                                                                                                                                          cccGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCAGCCGGGCGAtcc             <  2:130891/148‑3 (MQ=255)                                                                                                                                             gAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGaa         <  1:247560/149‑1 (MQ=255)                                                                                                                                             gAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGaa         >  2:247560/1‑149 (MQ=255)                                                                                                                                                 ccAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCTCCTGGAGATTTCTAACaaa     >  6:141074/1‑149 (MQ=255)                                                                                                                                                  cAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGAACCAAc    >  4:201493/1‑149 (MQ=255)                                                                                                                                                   aGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGAACCAACg   <  5:141074/149‑1 (MQ=255)                                                                                                                                                   aGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGATATCTATTTCGAACCAACg   >  8:27280/1‑149 (MQ=255)                                                                                                                                                    gCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACTGATCGCCCTTCTATCTATTTCGAACCAACgg  >  2:228289/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGCTGATACGCTGCAGGCCCTGGCCTACCCGCTCGCGCGCCTGGGGATCACGTTCCAGGCCCTGCAGGTAACGCTGACTGGCGTTGGCATAGTTGACCACCGCGGCCAGTGGCTGATTGAT‑CTCGTGGGCGA‑‑TGCCCGAGGCCAGCTCGCCCAGGGTAGCGAGGCGGGCACTGTGCGCCAGGCTTTCCTGCGCTTCGATGCGCAAGGTGATGTCGCGGGACACGCTGACCACCTCCACCACCGCACCGGTGTAGGTCTCACGGATCGCCCGGCTGGCGATTTCGAACCAACGG  >  NC_002947/4027553‑4027845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.