| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4344235 | 49 (0.910) | 6 (0.120) | 6/248 | NT | 11.8% | coding (1115/1149 nt) | PP_3817 | polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 4344251 | 43 (0.830) | coding (1131/1149 nt) | PP_3817 | polyamine ABC transporter ATP‑binding protein | |||||
GTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGCCACTGTCGTAATCTGCCG > NC_002947/4344105‑4344396 | gtggtgACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGtc < 7:298108‑M2/149‑3 (MQ=255) gtgACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAGCACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGtcg > 1:76984‑M2/1‑145 (MQ=255) gACTGCAGGGGGTACCGAGCTGACCGCGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCg > 1:184353/1‑149 (MQ=255) ggatctggggTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGTCAG‑ACGCTTGCTTTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCggg < 7:69405/143‑1 (MQ=255) tGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCgggg > 3:110684/1‑149 (MQ=255) cAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGgcg > 8:217377/1‑149 (MQ=255) cAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGgc < 2:49430/148‑1 (MQ=255) gggTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGAGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGACCAAGTCGGCCggc > 8:69405/1‑141 (MQ=255) cGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGt > 5:285600/1‑149 (MQ=255) gAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTg > 3:273935/1‑148 (MQ=255) aGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑c > 1:232130/1‑147 (MQ=255) aGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑c < 2:232130/147‑1 (MQ=255) gCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAgcg > 3:261229/1‑149 (MQ=255) cACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGctc < 1:151714/133‑1 (MQ=255) cACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGctc > 2:151714/1‑133 (MQ=255) tgcggcggGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCACTGGCAG‑ACGCTTGCATTTATACCGAATGGGCAGAGAGCTACCTGAGCAAGTCGGCCGCGGCGCATTAAAGCTCTTGTACGATG‑CACCGACTGc > 8:92912/2‑146 (MQ=255) cggcggGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAAc < 3:187621/120‑1 (MQ=255) cggcggGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAAc > 4:187621/1‑120 (MQ=255) cggcggGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGc > 8:1430/1‑144 (MQ=255) cggGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGa < 7:92912/149‑1 (MQ=255) gggCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAg < 4:273935/149‑1 (MQ=255) gCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCa > 2:302017/1‑149 (MQ=255) aGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCgg < 8:298108/149‑1 (MQ=255) cGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGcac < 3:190261/149‑1 (MQ=255) gACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGa > 5:285213/1‑148 (MQ=255) gACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGAt > 8:83530/1‑149 (MQ=255) aCAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATc < 6:163383/149‑1 (MQ=255) aGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTg < 4:261229/149‑1 (MQ=255) gTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTgg > 3:234607/1‑147 (MQ=255) tGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTGGCAg < 2:17353/149‑1 (MQ=37) gTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTGGCAgg < 7:223079/141‑1 (MQ=37) gTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTGGCAgg > 8:223079/1‑141 (MQ=37) ggccggggCCG‑ACGCTTGCAGTAATACCGAAGGGGCCGACCCCGACCGGAGCCCCTCGGCCGGGGCGCATTACCGCCCTTGACCGCGG‑CCGCGCCTCCCAGAGCGAGCACCGCCCGCGCGGCACCCGCTCTGGCAGGCGCTGCACTAtt < 6:285600/143‑1 (MQ=255) ggCTGTGGAAG‑ACGTTTTCATTTATACCTATTGGGCCGAGAGCGACCTGAGCAAGGCGGCGGGGGCTAATTAACGCTATTGTACGTTG‑CAGCGCCTGCCAGATCTAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTAtt < 2:184353/149‑1 (MQ=255) aGTGGCAG‑ACGCTTGAATTAATCCCGAATGGGCCCAGAGCGACCTGACCAAGGCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCCCCCACCGCCCGCGCGGCACACGATCTGTCAGGCGCTGCACTATTGGa < 6:267257/149‑1 (MQ=255) gCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTgg < 1:3062/126‑1 (MQ=25) cAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCg > 5:160179/1‑148 (MQ=255) gCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgccttcacg < 7:313938‑M2/144‑103 (MQ=255) gCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgccttcacg > 8:313938‑M2/1‑42 (MQ=255) gCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTGGCa > 1:47831/1‑122 (MQ=25) gCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGTGTGCCGCGCGGGCGGTGCTCGATCTGGCa < 2:47831/122‑1 (MQ=25) gCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCg < 4:234607/148‑1 (MQ=255) cATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGt < 7:1430/148‑1 (MQ=255) tataCCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACAt > 3:252220/1‑149 (MQ=255) taCCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGCTG‑CAGCGCCTGCCAGACCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACAtt < 6:189046/148‑1 (MQ=255) ccGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgc > 4:262097‑M2/1‑29 (MQ=255) ccGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgc < 3:262097‑M2/124‑96 (MQ=255) ccGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCTCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTatc < 7:267757/149‑1 (MQ=255) ccGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTatc < 6:160179/149‑1 (MQ=255) cGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgccttcac > 4:28617‑M2/1‑28 (MQ=255) cGAATGGGCCGAGAGCGACCTGAGCAAGtcggcccattcggtataaatgcaagcgtctgccactgcccaacgcaccttcacgctgtcgcccggctgcatcggcatgcccgccgccgacagtgccttcac < 3:28617‑M2/129‑102 (MQ=255) gattGGGCCGAGCGCGACCTTAGCATGGGGGCGGGGGCGTTTTACGGCTTTTGT‑CGTTGCCCGCGCCTGCCTTATCGACCACCGCCCGGGCGCAACACTATTTGGCTGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTatcat < 4:164028/146‑1 (MQ=255) gAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCTAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTatcat < 4:252220/149‑1 (MQ=255) aaTCGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCAGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGGGCTGCACTATTGGCGGCGTACGCCCCGGGACATTatcat > 4:206108/1‑148 (MQ=255) gCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGc > 2:111907/1‑148 (MQ=255) gCGACCTGAGCAAGTCGGCCGGGGCGAATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGCCACTGTCg < 3:46227/149‑1 (MQ=255) cAAGTCGGCCGGGGCGCATTAACTCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGCCACTGTCGTAATCTGCCg < 7:217377/149‑1 (MQ=255) cAAGGCGGCCGGGGCGCATTAACGCTCTTGTCCGTGG‑CAGCGCCGGCCAGATCGAGCACCGCCCGCGCGGCACACTATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGCCACTGTCGTAATCTGCCg < 6:285213/149‑1 (MQ=255) gTCGGCCGGGGCGCATTAACGCTCTTGAACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTatcat > 1:14202/1‑123 (MQ=255) | GTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGGCGGCGGGCATGCCGATGCAGCCGGGCGACAGCGTGAAGGTGCGTTGGGCAGTGGCAG‑ACGCTTGCATTTATACCGAATGGGCCGAGAGCGACCTGAGCAAGTCGGCCGGGGCGCATTAACGCTCTTGTACGTTG‑CAGCGCCTGCCAGATCGAGCACCGCCCGCGCGGCACACGATCTGGCAGGCGCTGCACTATTGGAGGCGTACGCCCCGTCACATTATCATCACGCCACTGTCGTAATCTGCCG > NC_002947/4344105‑4344396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |