New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5331205	41 (0.760)	3 (0.060)	3/238	NT	6.7%	coding (356/1173 nt)	PP_4692	aspartate/tyrosine/aromatic aminotransferase
	?	NC_002947	= 5331229	46 (0.930)					coding (332/1173 nt)	PP_4692	aspartate/tyrosine/aromatic aminotransferase

AACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGT  >  NC_002947/5331087‑5331374                                                                                                                                                 |                                                                                                                                                  aaCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgc                                                                                                                                             <  1:40254‑M2/149‑7 (MQ=255)  aCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgct                                                                                                                                            <  7:121282‑M2/149‑8 (MQ=255)  aCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgct                                                                                                                                            >  7:247727‑M2/1‑142 (MQ=255)   ccAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgctg                                                                                                                                           <  8:279303‑M2/149‑9 (MQ=255)     aGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgctggc                                                                                                                                         <  5:283586‑M2/149‑11 (MQ=255)          ggCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCcag                                                                                                                                      >  4:152777/1‑147 (MQ=255)                      aTAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCg                                                                                                                         <  2:40254/148‑1 (MQ=255)                      aTAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCg                                                                                                                         >  5:251492/1‑148 (MQ=255)                        aGTTGAGATCCGGGCCCACCGGTACCAATTGGGCCGCGCCCT‑CGACCAGGCGCAGGTAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCGAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCGAGCAGCAGCGCGCCGGa                                                                                                                       <  6:223298/148‑1 (MQ=255)                           tCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCa                                                                                                                   >  7:177129/1‑149 (MQ=255)                             acaTCCTGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCAcc                                                                                                                 <  2:279085/149‑1 (MQ=255)                               aTCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCgg                                                                                                               <  2:308760/149‑1 (MQ=255)                                tCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCggg                                                                                                              <  8:247841/149‑1 (MQ=255)                                  cGGGCCCACCGGTACCTATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCgggg                                                                                                             <  7:117269/148‑1 (MQ=255)                                    ggCCCACCGGTACCAATTGGGCCCCGCCCTACGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCggggg                                                                                                            >  1:31650/1‑148 (MQ=255)                                       ccACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGTTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGtaat                                                                                                        >  1:42877/1‑148 (MQ=255)                                           cGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGa                                                                                                   <  8:121282/149‑1 (MQ=255)                                            ggTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGAt                                                                                                  <  7:279303/149‑1 (MQ=255)                                            ggTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGAt                                                                                                  <  8:177129/149‑1 (MQ=255)                                               aCCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGAt                                                                                                  >  2:63387/1‑146 (MQ=255)                                               aCCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGAt                                                                                                  <  1:63387/146‑1 (MQ=255)                                                       ggCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGt                                                                                       <  5:320021/149‑1 (MQ=255)                                                          cccGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCTCCGGGTCCACCAGCAGGCTGCTGGCcagcagca                                                                                                                                 <  1:216594/105‑1 (MQ=255)                                                          cccGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCcagcagca                                                                                                                                 >  2:216594/1‑104 (MQ=255)                                                                    gACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAgg                                                                            <  2:31650/148‑1 (MQ=255)                                                                        aGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATa                                                                       <  6:297898/149‑1 (MQ=255)                                                                         ggCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAg                                                                      <  6:251492/149‑1 (MQ=255)                                                                                gAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGcc                                                               >  4:21987/1‑149 (MQ=255)                                                                                 aaGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGccc                                                              <  3:152777/149‑1 (MQ=255)                                                                                   gTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCa                                                             >  6:195970/1‑148 (MQ=255)                                                                                   gTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCAt                                                            <  6:283586/149‑1 (MQ=255)                                                                                             cACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTc                                                                                      <  1:79075/113‑1 (MQ=255)                                                                                             cACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTc                                                                                      >  2:79075/1‑113 (MQ=255)                                                                                              aCGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGc                                                  >  6:132775/1‑148 (MQ=255)                                                                                                gggTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTc                                                                                            <  6:175040/104‑1 (MQ=255)                                                                                                gggTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTc                                                                                            >  5:175040/1‑104 (MQ=255)                                                                                                   tAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGc                                            >  4:293043/1‑149 (MQ=255)                                                                                                   tAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGc                                            >  4:301471/1‑149 (MQ=255)                                                                                                       ccGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                        >  8:42860/1‑149 (MQ=255)                                                                                                              ggCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgctggccgatccgggttacccgtgcaatcgccacttcctgcgcctggtcgagggcggggcccaatt                                                                             >  4:4143‑M2/1‑35 (MQ=255)                                                                                                              ggCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgctggccgatccgggttacccgtgcaatcgccacttcctgcgcctggtcgagggcggggcccaatt                                                                             <  3:4143‑M2/105‑71 (MQ=255)                                                                                                                 cagcagCCAGTGCTTGC‑CCGGGTCCACCAGCAggctgctggccgatccgggttacccgtgcaatcgccacttcctgcgcctggtcgagggcggggcccaattggtaccggtgggcccggatgtgaactatcagctgactgccgacctgg                              <  6:173440‑M2/149‑118 (MQ=255)                                                                                                                  agcagcCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCgg                             >  7:257054/1‑149 (MQ=255)                                                                                                                   gcagcCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCgg                             >  2:277649/1‑148 (MQ=255)                                                                                                                    cagcCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAgg                                                                            <  7:100309/100‑1 (MQ=255)                                                                                                                    cagcCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAgg                                                                            >  8:100309/1‑100 (MQ=255)                                                                                                                       ccAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGAc                        <  5:132775/149‑1 (MQ=255)                                                                                                                             cTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGc                            >  7:202029/1‑139 (MQ=255)                                                                                                                             cTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGc                            <  8:202029/139‑1 (MQ=255)                                                                                                                                 c‑ccGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTgcggc              >  8:323078/1‑149 (MQ=255)                                                                                                                                   ccGGGTCCACCAGCAGGCTGTTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTgcggcg             <  2:42877/149‑1 (MQ=255)                                                                                                                                   ccGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTgcggcg             <  7:323078/149‑1 (MQ=255)                                                                                                                                   ccGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTgcggcg             <  3:293043/149‑1 (MQ=255)                                                                                                                                   ccGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTgcggcg             <  8:257054/149‑1 (MQ=255)                                                                                                                                            ccaGCAGGCTGCTGGCCAGCAGCAGCGCTCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGGCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGa    <  7:118433/149‑1 (MQ=255)                                                                                                                                             cagcagGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAg   <  3:301471/149‑1 (MQ=255)                                                                                                                                              agcagGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAgt  <  5:7463/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  AACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCT‑CGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGC‑CCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGT  >  NC_002947/5331087‑5331374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.