New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5547926 =	67 (1.240)	4 (0.080)	4/246	NT	5.7%	coding (1128/2574 nt)	rnr	exoribonuclease R
	?	NC_002947	5547986 =	69 (1.350)					coding (1068/2574 nt)	rnr	exoribonuclease R

GGGTACGCGAGTGCTCGAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTGGAGACGTCAGCGAT  >  NC_002947/5547841‑5548132                                                                                                                                                  |                                                                                                                                                     gggTACGCGAGTGCTCGAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGc                                                                                                                                                   <  3:151829/149‑1 (MQ=255)      actcggtgtacttccccgagcgcgtggtgccgatgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcatGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACa                                                                                                                                                      >  5:180971‑M1/81‑141 (MQ=255)      actcggtgtacttccccgagcgcgtggtgccgatgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcatGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACa                                                                                                                                                      <  6:180971‑M1/61‑1 (MQ=255)         gAGTGCTCGAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAg                                                                                                                                           >  5:229001/1‑149 (MQ=255)         gAGTGCTCGAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAg                                                                                                                                           >  2:614/1‑149 (MQ=255)                 gAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGc‑a                                                                                                                                    >  5:196446/1‑147 (MQ=255)                 gAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGc‑a                                                                                                                                    >  7:126389/1‑147 (MQ=255)                       gctgctGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATg                                                                                                                                                    <  4:57041/126‑1 (MQ=255)                       gctgctGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATg                                                                                                                                                    >  3:57041/1‑126 (MQ=255)                        ctgctgACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGt                                                                                                                            <  3:266813/148‑1 (MQ=255)                           ctgACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGa                                                                                                                        >  6:201361/1‑149 (MQ=255)                              aCCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGtt                                                                                                                           >  3:132429/1‑143 (MQ=255)                              aCCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGtt                                                                                                                           <  4:132429/143‑1 (MQ=255)                              aCCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGAc                                                                                                                       <  6:37225/147‑1 (MQ=255)                                    ttgtAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCtt                                                                                                                <  1:56005/148‑1 (MQ=255)                                       tAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCgg                                                                                                             <  6:196446/148‑1 (MQ=255)                                         ggTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGa                                                                                                          <  8:25391/149‑1 (MQ=255)                                             aGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCAt                                                                                                      >  6:27142/1‑149 (MQ=255)                                              gACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATc                                                                                                     <  4:85269/149‑1 (MQ=255)                                               aCGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCg                                                                                                    >  6:66382/1‑149 (MQ=255)                                                 gggCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCgg                                                                                                   >  4:112422/1‑148 (MQ=255)                                                 gggCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGATAATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCgg                                                                                                   >  1:275331/1‑148 (MQ=255)                                                    cATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGca‑cc                                                                                              >  7:151747/1‑149 (MQ=255)                                                           gTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCt                                                                                       >  6:320813/1‑149 (MQ=255)                                                           gTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCt                                                                                       >  4:337058/1‑149 (MQ=255)                                                              gATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    >  5:21647/1‑149 (MQ=255)                                                              gATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    <  6:229001/149‑1 (MQ=255)                                                              gATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    >  8:69294/1‑149 (MQ=255)                                                              gATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    >  3:3723/1‑149 (MQ=255)                                                                  aCGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGaa                                                                                <  5:151567/149‑1 (MQ=255)                                                                   cGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAg                                                                               <  3:181159/149‑1 (MQ=255)                                                                    gCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAg                                                                               >  5:172087/1‑148 (MQ=255)                                                                      cTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCAcgc                                                                                          >  1:126417/1‑135 (MQ=255)                                                                      cTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCAcgc                                                                                          <  2:126417/135‑1 (MQ=255)                                                                       ttCGTTGATCTTATAGTCGACCATCTGGCGGGCTTTGTTGATGGTCATTTCACAGACCATGTCCAACCGGTCGAGATGCGGTTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCggg                                                                                                            <  6:69801/117‑1 (MQ=255)                                                                       ttCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTaca                                                                           >  5:201071/1‑149 (MQ=255)                                                                       ttCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGAATAGCGCGCAAGAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGtc                                                                             >  1:283868/1‑147 (MQ=255)                                                                       ttCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACAATGGCCAACCGGTCGACATTCGGGTTCAGCGAGC‑ACAGGCAGTTGGACAGCTCTTCggg                                                                                                            >  5:69801/1‑117 (MQ=255)                                                                          gTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCg                                                                        <  5:320813/149‑1 (MQ=255)                                                                           tAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGa                                                                       <  3:337058/149‑1 (MQ=255)                                                                           tAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGa                                                                       <  6:172087/149‑1 (MQ=255)                                                                             gAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAg                                                                      <  6:279357/148‑1 (MQ=255)                                                                             gAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGt                                                                     <  6:21647/149‑1 (MQ=255)                                                                               aCTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTg                                                                                                                          >  7:163048/1‑95 (MQ=255)                                                                               aCTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTg                                                                                                                          <  8:163048/95‑1 (MQ=255)                                                                                 tGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTAcc                                                                 >  5:230357/1‑149 (MQ=255)                                                                                  gATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACcg                                                                >  6:328599/1‑149 (MQ=255)                                                                                   aTAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACcgc                                                               >  2:99385/1‑149 (MQ=255)                                                                                     tgtcgaccggttggccatggtctgtgaaatgaccatgaacaaagccggccagatggtcgacATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGt                                                                     >  5:180971‑M2/62‑141 (MQ=255)                                                                                     tgtcgaccggttggccatggtctgtgaaatgaccatgaacaaagccggccagatggtcgacATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGt                                                                     <  6:180971‑M2/80‑1 (MQ=255)                                                                                      gtcgaccggttggccatggtctgtgaaatgaccatgaacaaagccggccagatggtcgacATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGt                                                                              <  7:177621‑M2/71‑1 (MQ=255)                                                                                      gtcgaccggttggccatggtctgtgaaatgaccatgaacaaagccggccagatggtcgacATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGt                                                                              >  8:177621‑M2/61‑131 (MQ=255)                                                                                          ACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGctgctg                                                        >  6:201071‑M1/1‑149 (MQ=255)                                                                                           CCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTaca                                                                           >  2:54495‑M1/1‑129 (MQ=255)                                                                                           CCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTaca                                                                           <  1:54495‑M1/129‑1 (MQ=255)                                                                                           CCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTgg                                                       >  8:151747‑M1/1‑149 (MQ=255)                                                                                           CCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGACGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGCCAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTgg                                                       <  5:229071‑M1/149‑1 (MQ=255)                                                                                                  gCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGATCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCg                                                 <  7:226424/148‑1 (MQ=255)                                                                                                  gCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTc                                                  <  8:126389/147‑1 (MQ=255)                                                                                                  gCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTc                                                  <  1:614/147‑1 (MQ=255)                                                                                                    cGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCgg                                                                                                             <  8:198450/87‑1 (MQ=255)                                                                                                    cGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCgg                                                                                                             >  7:198450/1‑87 (MQ=255)                                                                                                     ggCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACAt                                             >  3:272633/1‑149 (MQ=255)                                                                                                      gCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATc                                            <  4:272633/149‑1 (MQ=255)                                                                                                           gTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAgg                                        <  7:69294/148‑1 (MQ=255)                                                                                                            ttCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCg                                                                                     >  6:114163/1‑102 (MQ=255)                                                                                                            ttCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCg                                                                                     <  5:114163/102‑1 (MQ=255)                                                                                                            ttCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAggg                                       >  5:265907/1‑148 (MQ=255)                                                                                                              cATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCACCCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGc                                      <  1:99385/148‑1 (MQ=255)                                                                                                              cATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCa                                     <  5:27142/148‑1 (MQ=255)                                                                                                               aTGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCa                                     >  2:28485/1‑147 (MQ=255)                                                                                                                 ggTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGc                                 >  1:73170/1‑149 (MQ=255)                                                                                                                  gTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGcc                                >  7:254634/1‑149 (MQ=255)                                                                                                                   tCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    >  5:123959/1‑96 (MQ=255)                                                                                                                   tCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCgg                                                                                    <  6:123959/96‑1 (MQ=255)                                                                                                                   tCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGccc                               <  6:265907/149‑1 (MQ=255)                                                                                                                     aTTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATcc                                           >  6:125803/1‑135 (MQ=255)                                                                                                                     aTTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATcc                                           <  5:125803/135‑1 (MQ=255)                                                                                                                       ttCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGAc                           >  2:346611/1‑149 (MQ=255)                                                                                                                            aGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGAc                                               <  7:289721/124‑1 (MQ=255)                                                                                                                            aGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGcaca                      <  3:138232/149‑1 (MQ=255)                                                                                                                                  tGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTg                <  4:3723/149‑1 (MQ=255)                                                                                                                                  tGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTg                >  7:1062/1‑149 (MQ=255)                                                                                                                                               gacATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTGGAGACGTCAGCGa   <  8:1062‑M2/146‑1 (MQ=255)                                                                                                                                                acATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTGGAGACGTCAGCGAt  >  2:183161‑M2/3‑149 (MQ=255)                                                                                                                                                  aTGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGAc                           >  8:28042/1‑122 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGGTACGCGAGTGCTCGAGCATGCTGCTGACCTTGTTGTAGGTCAGACGGGCATGGGAGTGGATCACGCCTTCGTAGAACTGATAGTCGACCATCTGGCCGGCTTTGTTCATGGTCATTTCACAGACCATGGCCAACCGGTCGACATGCGGGTTCAGCGAGC‑ACAGGCCGTTGGACAGCTCTTCGGGGAGCATCGGCA‑CCACGCGCTCGGGGAAGTACACCGAGTTACCGCGCTGCTGGGCTTCGACATCCAGGGCAGAGCCCAGACGCACATAGCTGGAGACGTCAGCGAT  >  NC_002947/5547841‑5548132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.