New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5661040	48 (0.890)	3 (0.060)	3/240	NT	6.6%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	41 (0.820)					coding (694/1701 nt)	ligB	DNA ligase B

TCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCACCGACGGT  >  NC_002947/5660921‑5661212                                                                                                                                                      |                                                                                                                                                tCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGc                                                                                                                                                 >  8:126905/1‑149 (MQ=255)   tGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaa                                                                                                                                               <  7:18045‑M2/149‑3 (MQ=255)     cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGc                                                                                                                                                 <  8:203286/145‑1 (MQ=255)     agccTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGTGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaaca                                                                                                                                             >  6:103534‑M2/2‑145 (MQ=255)        cTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggc                                                                                                                                          >  7:162801‑M2/1‑142 (MQ=255)        cTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggc                                                                                                                                          >  5:37651‑M2/1‑142 (MQ=255)            aCGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGaa                                                                                                                                      <  1:11663/149‑1 (MQ=255)              gAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACg                                                                                                                                    >  6:241082/1‑149 (MQ=255)                aCATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGc                                                                                                                                   >  4:172885/1‑148 (MQ=255)                  aTGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTc                                                                                                                                >  6:293316/1‑149 (MQ=255)                       cAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCa                                                                                                                           <  7:195588/149‑1 (MQ=255)                           ccAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTg                                                                                                                       <  4:196562/149‑1 (MQ=255)                           ccAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTg                                                                                                                       <  3:172885/149‑1 (MQ=255)                             aaGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGc                                                                                                                     <  6:67706/149‑1 (MQ=255)                                      agtgcCAACGCCCGGGGTACCGTGGGAGGGCTGCTCGCACGAAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCATCTGGCACGACTggg                                                                                                            <  2:111121/146‑1 (MQ=255)                                       gcgcCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGt                                                                                                           <  5:53484/149‑1 (MQ=255)                                               gCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGa                                                                                                   >  4:60914/1‑149 (MQ=255)                                                 ccGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTc                                                                                                       >  2:279257/1‑143 (MQ=255)                                                 ccGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTc                                                                                                       <  1:279257/143‑1 (MQ=255)                                                     ggTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAcagcca                                                                                             <  7:126905/149‑1 (MQ=255)                                                      gTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAcagccag                                                                                            <  5:293316/149‑1 (MQ=255)                                                         ccGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCtt                                                                                         >  8:48136/1‑149 (MQ=255)                                                              gCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGcc                                                                                                                             >  1:265101/1‑108 (MQ=255)                                                              gCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGcc                                                                                                                             <  2:265101/108‑1 (MQ=255)                                                               cAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAg                                                                                    >  3:318118/1‑148 (MQ=255)                                                                            acgcaAGCAACTGACTGGCGCACAAGGCAACGCTGATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                                                      >  1:220929/1‑134 (MQ=255)                                                                            acgcaAGCAACTGACGGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGGTTGGGGCTGGCCGCAGGGCCCCGTGCAACAGGCCGAAGGCCTCGCCCTGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                                                      <  2:220929/133‑1 (MQ=255)                                                                                   caaCTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTgga                                                               <  2:82823/149‑1 (MQ=255)                                                                                         actgGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGAt                                                           <  4:318118/147‑1 (MQ=255)                                                                                           tgGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgcag                                                       >  3:146382/1‑149 (MQ=255)                                                                                               gcACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGcaca                                                   >  4:82604/1‑149 (MQ=255)                                                                                                  caAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACTGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTg                                                >  3:91374/1‑149 (MQ=255)                                                                                                     ggCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGgcg                                             >  5:162421/1‑149 (MQ=255)                                                                                                        aaCGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGa                                                                                                   >  2:114450/1‑92 (MQ=255)                                                                                                        aaCGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGa                                                                                                   <  1:114450/92‑1 (MQ=255)                                                                                                        aaCGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGgcgc                                            >  1:143068/1‑147 (MQ=255)                                                                                                                tCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg                                    <  5:241082/148‑1 (MQ=255)                                                                                                                tCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg                                    <  8:18045/148‑1 (MQ=255)                                                                                                                tCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg                                    <  3:82604/148‑1 (MQ=255)                                                                                                                  ggCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtc                                   <  7:166723‑M2/147‑111 (MQ=255)                                                                                                                          cGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctct                          <  3:60914/148‑1 (MQ=255)                                                                                                                           gtgtGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggctt                                                >  2:19436‑M2/1‑28 (MQ=255)                                                                                                                           gtgtGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggctt                                                <  1:19436‑M2/125‑98 (MQ=255)                                                                                                                           gtgtGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctctg                         <  4:146382/148‑1 (MQ=255)                                                                                                                             gtgGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctctgctc                      >  3:263514/1‑149 (MQ=255)                                                                                                                              tgGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctctgctct                     <  6:162421/149‑1 (MQ=255)                                                                                                                                gggCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGctctgctctg                    <  7:199626/148‑1 (MQ=255)                                                                                                                                      gCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTc              <  2:143068/148‑1 (MQ=255)                                                                                                                                            cGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCAcc        >  4:200051/1‑148 (MQ=255)                                                                                                                                             ggCCCCGAGCAACTGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCACCGa      <  4:91374/149‑1 (MQ=255)                                                                                                                                             ggCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCACCGa      >  3:225261/1‑149 (MQ=255)                                                                                                                                                cccGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGctctgctctg                    >  2:291582/1‑132 (MQ=255)                                                                                                                                                 ccGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCACCGACGgt  >  2:131378/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                TCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCT‑ATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCACCGACGGT  >  NC_002947/5660921‑5661212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.