| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5908269 | 55 (1.020) | 8 (0.160) | 5/246 | NT | 14.2% | coding (952/1098 nt) | spuD | spermidine/putrescine ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 5908285 | 45 (0.880) | coding (936/1098 nt) | spuD | spermidine/putrescine ABC transporter substrate‑binding protein | |||||
TCGTCCAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGTCGTAGAAAGTACCGGCACCTTCCTTCG > NC_002947/5908143‑5908430 | tCGTCCAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTAccgttc < 3:16190‑M2/149‑7 (MQ=255) cGTCCAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTAcc > 7:97183‑M2/1‑142 (MQ=255) gTCCAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCgg < 5:159428/149‑1 (MQ=255) cAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGaaa < 6:347800/149‑1 (MQ=255) tGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAgcgc > 4:63711/1‑149 (MQ=255) gCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCa > 7:136900/1‑149 (MQ=255) gggTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACg > 8:266974/1‑149 (MQ=255) gATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGt > 1:329325/1‑149 (MQ=255) tCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTg < 3:208683/149‑1 (MQ=255) tCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTg < 7:108339/149‑1 (MQ=255) cACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACATCGGCAGGCGGATAGATGCTAGGGTCGCTGGAGATGTCTTTGTCAACGAACGGGGTGGCGGCAGCGGGACCGGTCGGAAAGCGCACGGCGTTgg > 8:299348/1‑149 (MQ=255) aCTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGt < 7:47794/149‑1 (MQ=255) cGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGAt > 2:26752/1‑149 (MQ=255) cacaGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCa < 1:26752/148‑1 (MQ=255) cacaGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCACCTTTACCGTACGGAAACCGAAGGCCGTTGGTTATTTAAg > 6:84477/1‑149 (MQ=255) acaGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGc < 6:149638/149‑1 (MQ=255) aGAAGCGTCAGGCGCAGCGATCGCGTACAGCTGGCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGaaa > 1:216387/1‑124 (MQ=255) aGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGaaa < 2:216387/123‑1 (MQ=255) ggCGGATCGATCGCGTACAGCT‑GATTCTTCTCTTCGGCAGGCGGATAGTTGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCgg < 3:199135/149‑1 (MQ=255) gcgcAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGc > 1:229630/1‑149 (MQ=255) cgcAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCt < 8:136900/149‑1 (MQ=255) gcAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTg > 1:320980/1‑149 (MQ=255) gCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCAt < 2:229630/149‑1 (MQ=255) gCGAGCGCGTACCGCT‑TCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCGGGTGAAGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCAt < 8:221046/149‑1 (MQ=255) gATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCgga > 7:267794/1‑141 (MQ=255) gATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGc < 8:267794/142‑1 (MQ=255) tCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAgg < 4:16190/149‑1 (MQ=255) gTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGt < 5:199055/149‑1 (MQ=255) cAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCa < 3:63711/149‑1 (MQ=255) cAGCT‑GCTTCTTCACTTCCGCAGGCGGATAGATGCTTCGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCa < 4:53785/149‑1 (MQ=255) aGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCAt > 3:271979/1‑149 (MQ=255) cttcttCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACt > 1:83319/1‑149 (MQ=255) tcttcACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCg > 1:270193/1‑149 (MQ=255) ctttccTTCGGCAGGGGGTTTGATGCTTGGGTTGGGTGTGATGTCTTTTTACAAGTACGGGGTGGCAGCAGCGTTACAGTTCGGAAAGCTCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGTAAGTTCATGAACTCg < 5:84477/143‑1 (MQ=255) cttcACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAAATCg > 5:307245/1‑148 (MQ=255) cACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTa < 2:320980/147‑1 (MQ=255) aCTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGc < 6:307245/149‑1 (MQ=255) cGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAg < 7:266974/147‑1 (MQ=255) cGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGc < 2:83319/148‑1 (MQ=255) cAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCt > 5:128855/1‑149 (MQ=255) ggCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCttt < 6:128855/149‑1 (MQ=255) gCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTa < 2:329325/149‑1 (MQ=255) gATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCg < 3:150899/148‑1 (MQ=255) gggTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCt < 8:130505/147‑1 (MQ=255) tCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCgg > 4:238170/1‑149 (MQ=255) tttGTGCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGt < 7:299348/149‑1 (MQ=255) tCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGTCGTa < 4:271979/149‑1 (MQ=255) cgacgAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtg > 5:37058‑M2/3‑26 (MQ=255) ccACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtgcagcgagtgatcacccgcagctg < 8:189584‑M2/148‑123 (MQ=255) ccACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtg > 7:193841‑M2/1‑26 (MQ=255) ccACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtg < 8:193841‑M2/125‑100 (MQ=255) ccACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtg < 6:37058‑M2/125‑100 (MQ=255) cACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcg > 8:11572‑M2/1‑25 (MQ=255) cACGAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcg < 7:11572‑M2/104‑80 (MQ=255) cACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCttt > 2:313664/1‑111 (MQ=255) cACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTc > 5:273441/1‑127 (MQ=255) cACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTc < 6:273441/127‑1 (MQ=255) aCGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGTCGTAGa > 2:20031/1‑148 (MQ=255) gAACGGGGTGGCAGCAGCGTTAccgttcgtggacaaagacatcaccagcgacccaagcatctatccgcctgccgaagtgaagaagcagctgtacgcgatcgctgcgcctgacgcttctgtgcagcgagtgatcacccgcagctggacg < 8:123636‑M2/148‑127 (MQ=255) ttACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGTCGTAGAAAGTACCGGCACCTTCCTTCg > 8:23336/1‑148 (MQ=255) | TCGTCCAGCTGCGGGTGATCACTCGCTGCACAGAAGCGTCAGGCGCAGCGATCGCGTACAGCT‑GCTTCTTCACTTCGGCAGGCGGATAGATGCTTGGGTCGCTGGTGATGTCTTTGTCCACGAACGGGGTGGCAGCAGCGTTACCGTTCGGAAAGCGCACGGCGTTGGTGATTTCAGCCATGATTTCCGGCTGCATCAGGAAGTTCATGAACTCGTAGGCAGCGTCTTTATGTTCGGCATCTTTCGGGATGGCGACCATGTCGTAGAAAGTACCGGCACCTTCCTTCG > NC_002947/5908143‑5908430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |