New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5926359 = | 50 (0.920) | 4 (0.080) | 4/244 | NT | 8.4% | coding (1536/1623 nt) | PP_5195 | iron ABC transporter permease |
? | NC_002947 | 5926390 = | 40 (0.790) | coding (1505/1623 nt) | PP_5195 | iron ABC transporter permease |
AAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACACCTTGAAAA > NC_002947/5926252‑5926537 | ggcgccgcgctgctggtgttcgtcgatgtgcttaaggaaatgcccgccacgttgctgatgcggccgttcggctgggataccctcgccgtgcgggtgttcgagatgacCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGa > 8:27379‑M1/108‑148 (MQ=255) ggTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAaca < 7:102325/149‑1 (MQ=255) gTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAacac < 7:167369/149‑1 (MQ=255) gTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAacac > 4:116234/1‑149 (MQ=255) tGACATCCTCAGAGACTGTGACCGGGTCGACGGGCCGAACGGCGATTCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGATGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCCCACGGc > 1:243700/1‑149 (MQ=255) cATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCTCGCTCCCACTCGCCCTCGCTTGTCATCTCGAACACCCGCACTGcta < 6:38979/148‑3 (MQ=255) cATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAg < 6:160269/149‑1 (MQ=255) atgcTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAgg < 2:306383/146‑1 (MQ=255) cTCAGTGACTGTGACCGGGTGGACGGGCAGAACGGCGAATAAGGCCGATGACCGGCAGCAGTCCCACCAATACCAAGGTCAGTGCCGGCAGCGTGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGATCACCCGCACGGCGAGGGt < 2:243700/148‑1 (MQ=255) cTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGcc < 3:116234/149‑1 (MQ=255) tgACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGaa > 8:143074/1‑149 (MQ=255) aCCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAAc < 7:131939/148‑1 (MQ=255) aCCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACg > 1:39824/1‑149 (MQ=255) cGGGTCGACGGGCCGAACGGTGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGc > 2:167999/1‑149 (MQ=255) ggTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCATCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAggg < 2:311237/130‑1 (MQ=255) ggTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCATCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAggg > 1:311237/1‑130 (MQ=255) gTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCg > 6:67620/1‑148 (MQ=255) aCGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCAt > 8:2829/1‑147 (MQ=255) gCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCaa > 3:201576/1‑149 (MQ=255) cGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGc < 2:116446/149‑1 (MQ=255) ggCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCg > 6:124051/1‑149 (MQ=255) aGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTc < 1:167999/149‑1 (MQ=255) gCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCCGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCt > 4:164234/1‑149 (MQ=255) cGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCtt > 3:57800/1‑148 (MQ=255) gATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTaa < 5:67620/149‑1 (MQ=255) cGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACAt > 5:115938/1‑149 (MQ=255) gcagcaGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATcg > 7:143764/1‑149 (MQ=255) agcagGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTTAg < 5:89843/140‑1 (MQ=255) agcagGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTTAg > 6:89843/1‑140 (MQ=255) cccACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGTCGAacac < 2:39824/149‑1 (MQ=255) ccaccaATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCa > 6:103144/1‑123 (MQ=255) ccaccaATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCa < 5:103144/123‑1 (MQ=255) accaATACCAAGGTCAGTGCCGGCAGCGCGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACcag > 8:212254/1‑149 (MQ=255) aTACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCCCGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCagcagc > 3:239574/1‑149 (MQ=255) cAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcgg > 5:221710/1‑149 (MQ=255) cAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcgg > 4:48923/1‑149 (MQ=255) cAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcgg > 7:272721/1‑149 (MQ=255) tcgagatgaccagcgagggcgagtgggcgcgcgcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGcc > 8:27379‑M2/42‑148 (MQ=255) cAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcggc > 7:83545/1‑144 (MQ=255) cAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcggc < 8:83545/144‑1 (MQ=255) aGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACTAACACCATCAGCGCGGCGCCaa < 4:57800/148‑1 (MQ=255) cagcgagggcgagtgggcgcgcgcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTaa < 3:109647‑M2/76‑1 (MQ=255) cagcgagggcgagtgggcgcgcgcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTaa > 4:109647‑M2/32‑107 (MQ=255) AGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcgg > 3:172675‑M1/1‑133 (MQ=255) AGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCgcgg < 4:172675‑M1/133‑1 (MQ=255) gcgagggcgagtgggcacgcgcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCgg > 4:237315‑M2/30‑148 (MQ=255) GCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGc < 1:229092‑M1/149‑1 (MQ=255) GCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGc > 6:115938‑M1/1‑149 (MQ=255) CGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACAt < 5:259711‑M1/110‑1 (MQ=255) CGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACAt > 6:259711‑M1/1‑110 (MQ=255) gcgcgcCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGCGTATCCCAGCCGAACGGCCGCATCAGCAACTTGGCGGGCATTTCCTTAAGCACATCGACGACCACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACcag > 8:148464/1‑147 (MQ=255) cacgcgcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGa < 3:237315‑M2/135‑1 (MQ=255) cTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATcgac > 2:216839/1‑99 (MQ=255) cTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATcgac < 1:216839/99‑1 (MQ=255) gcctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATacac < 7:27379‑M2/140‑1 (MQ=255) cctggctgGTCATCTCGAACACCCGCTCGGCGAGGGTATCCCAGCCGATCGGCCGCATCAGCAACGTGGCTGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGGCAAGCGCCCCCGGCACCAGCAGCGGCAGATACAcc < 4:215449‑M2/141‑1 (MQ=255) cctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACAcc > 4:35283‑M2/9‑149 (MQ=255) cctcgctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACAcc > 2:75747‑M2/9‑149 (MQ=255) gctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACACCtt < 5:124051‑M2/143‑1 (MQ=255) gctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACACCTTGa < 3:164234‑M2/145‑1 (MQ=255) ctgGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCAGCAGCAGCGGCAGCTACACCTTGa > 8:288856‑M2/4‑148 (MQ=255) gTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACACCTTGaaaa < 6:221710/148‑1 (MQ=255) | AAGGTCGCAAACTGACATCCTCAGTGACTGTGACCGGGTCGACGGGCCGAACGGCGAATCAGGCCGATGACCGGCAGCAGGCCCACCAATACCAAGGTCAGTGCCGGCAGCGAGGCGCGCGCCCACTCGCCCTCGCTGGTCATCTCGAACACCCGCACGGCGAGGGTATCCCAGCCGAACGGCCGCATCAGCAACGTGGCGGGCATTTCCTTAAGCACATCGACGAACACCAGCAGCGCGGCGCCAAGCGCCCCCGGCACCAGCAGCGGCAGATACACCTTGAAAA > NC_002947/5926252‑5926537 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |