| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1441693 | NA (NA) | 18 (0.290) | 14/272 | 4.8 | 28.6% | intergenic (+37/+395) | PP_1260/ghrB | transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase |
| ? | NC_002947 | = 2051324 | 46 (0.730) | coding (355/591 nt) | PP_1826 | isochorismatase family hydrolase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1441547‑1441693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCCGTGACCTGGCATTCAAGGACGGCGT < NC_002947/2051324‑2051176 CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCTCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGA < 6:274507/149‑1CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGA < 8:250843/149‑1 GTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGC > 5:362466/1‑136 GTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGC < 6:362466/136‑1 TCTTTAGGAGTTCGAAGACAGAATCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCTGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGAC < 4:63660/149‑1 TTCGAAGCCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCT < 7:83209/149‑1 TCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCA < 7:193826/148‑1 GGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCAC > 6:365826/1‑149 AACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTG > 1:198729/1‑149 AACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTG < 5:365826/149‑1 AACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGT < 1:329884/148‑1 ACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTG > 1:322058/1‑148 GAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAACGACTATGGTTATCGGTGCACCCTGGTAGAAGA > 8:280819/1‑149 GAAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGC < 2:198729/149‑1 AAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGAC < 5:384849/140‑1 AAAACAATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGAC > 6:384849/1‑140 AATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCC > 7:5196/1‑148 AATGGGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCC < 8:5196/148‑1 GGTTGCATTTTGTTTGATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCCGTGA < 7:280819/148‑1 GATGAGAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCCGTGACCTGGCATTCAAGGA < 2:322058/148‑1 GAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCCGTGACCTGGCATTCAAGGACGGCGT < 2:92267/149‑1 CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1441547‑1441693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTGGGCCACCTGGACCTGATCGTCTGTGGTTTCATGAGCCATTCCAGCGTCAGCACCACCGTTCGCCGCGCCAAGGACTATGGTTATCGGTGCACCCTGGTAGAAGACGCGTCGGCCACCCGTGACCTGGCATTCAAGGACGGCGT < NC_002947/2051324‑2051176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |