| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3951097 | 44 (0.690) | 22 (0.350) | 20/276 | 3.4 | 38.7% | intergenic (‑61/+134) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| ? | NC_002947 | = 3951157 | 26 (0.410) | intergenic (‑121/+74) | PP_3486/PP_3487 | cytochrome c/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3950963‑3951097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGCC < NC_002947/3951157‑3951010 TCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTC > 3:209952/1‑149 TTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCAC > 8:327671/1‑149 GCTGAGGGCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGC < 7:327671/149‑1 GAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAG < 4:209952/148‑1 GGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTG > 6:268299/1‑75 GGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTG < 5:268299/75‑1 CGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAAC > 2:32706/1‑149 GCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACC > 3:85817/1‑149 GTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTC < 4:85817/149‑1 GTCGCGAAAGGAGCGCGCAGCGCTCACCTCTTTCTGCGCTTGAGCTGCCACTGCCGGCGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCATCACTGCGTGCTTGGCATGGCAACTTCGACCT > 5:269967/1‑148 CGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCT > 5:221270/1‑114 CGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCT < 6:221270/114‑1 GCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGC > 5:246712/1‑149 GAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCT < 8:295271/116‑1 GAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCT > 7:295271/1‑116 aggGGAGCGCTGCGCGCTCCTCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATAT < 8:229578/103‑1 aggGGAGCGCTGCGCGCTCCTCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATAT > 7:229578/4‑106 AAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGG > 2:230286/1‑130 AAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGG < 1:230286/130‑1 AAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTA > 1:83804/1‑112 AAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTA < 2:83804/112‑1 GGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGC < 6:246712/149‑1 GAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGCC > 7:83516/1‑149 GAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGCC > 5:84572/1‑149 GAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGCC > 8:4954/1‑149 TCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3950963‑3951097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTGCGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGCC < NC_002947/3951157‑3951010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |