| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5334843 = | 73 (1.150) | 17 (0.290) | 16/258 | 4.0 | 20.4% | coding (1273/2976 nt) | PP_4695 | two‑component system sensor histidine kinase |
| ? | NC_002947 | = 5334835 | 65 (1.100) | coding (1265/2976 nt) | PP_4695 | two‑component system sensor histidine kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCCATGTGCCAGCTGGTGTCGTCCAGCACATAGATCATGTCCAGCAGCGGGATGTAGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5334994‑5334843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggttggcCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGACGATCAGTGCACGGC < NC_002947/5334835‑5334691 GCCATGTGCCAGCTGGTGTCGTCCAGCACATAGATCATGTCCAGCAGCGGGATGTAGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTT < 3:368305/149‑1 TGCCAGCTGGTGTCGTCCAGCACATAGATCATGTCCAGCAGCGGGATGTAGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAG < 2:69597/149‑1 CCAGCTGGTGTCGTCCAGCACATAGATCATGTCCAGCAGCGGGATGTAGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAG > 5:85905/1‑147 AGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAGCCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGG > 4:315840/1‑149 TTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGG < 6:85905/149‑1 CGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCATCAGCCCGGCGATGAAACCGCGGCGGTTGGCCA < 5:118274/81‑1 CGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCATCAGCCCGGCGATGAAACCGCGGCGGTTGGCCA > 6:118274/1‑81 ATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCT > 8:13788/1‑148 ACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGG > 3:171859/1‑148 CGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGC > 1:129625/1‑149 CGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTA < 6:253491/138‑1 CGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTA > 5:253491/1‑138 CCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAG < 5:358376/129‑1 CCCGGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAG > 6:358376/1‑129 GGCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGAT < 4:171859/149‑1 GCGATGAAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGGGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGAGGATG > 7:259407/1‑149 AAACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGAC > 7:82269/1‑148 AACCGCGGCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGACGA < 8:82269/149‑1 gtCGGTTTGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCTACGAAGGCGACGATGCACAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCTTTGATGATGGCTACGATCAGT < 7:264645/146‑1 GCGGTTGGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGACGATCAGTG < 5:242355/148‑1 GGCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGACGATCAGTGCACGGC < 3:48019/148‑1 GCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAA < 6:120686/40‑1 GCCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAA > 5:120686/1‑40 GCCATGTGCCAGCTGGTGTCGTCCAGCACATAGATCATGTCCAGCAGCGGGATGTAGAAACCCTGCAAGTTGCCGAGAAGCGGCAGCAGCATGGTCACCATCCACACCAGGGTGCCGGCCAGCAGCCCGGCGATGAAACCGCGGCGGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5334994‑5334843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggttggcCAGTAGAGTACCGACAGCACTCCGGGCAGGAACTGCAAGGTGGCGACGAAGGCGACGATGCCCAGGTTGGCCAGGCTCTGGTGGTAGTTCTGGCTCAGGTAGAACATGAAGCCGGCGGTGATGATGGCGACGATCAGTGCACGGC < NC_002947/5334835‑5334691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |