New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2051324	46 (0.730)	17 (0.270)	16/272	4.2	27.4%	coding (355/591 nt)	PP_1826	isochorismatase family hydrolase
	?	NC_002947	3826611 =	NA (NA)					intergenic (‑566/+37)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase
Rejected: Coverage evenness skew score above cutoff.

ACGCCGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGAAACGGCCACCAACAGTG  >  NC_002947/2051176‑2051463                                                                                                                                                      |                                                                                                                                            aCGCCGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTc                                                                                                                                             >  2:92267/1‑149 (MQ=255)  cGCCGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTcc                                                                                                                                            <  7:82168/149‑1 (MQ=255)     cGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTg                                                                                                                                          >  1:13795/1‑148 (MQ=255)     cGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTg                                                                                                                                          >  1:7882/1‑148 (MQ=255)       tCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTctcatc                                                                                                                                        >  2:322058/1‑143 (MQ=255)                 ccAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGAGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATTAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGc                                                                                                                             <  5:274457/149‑1 (MQ=255)                                ccGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGATACAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCtt                                                                                                               <  1:92267/149‑1 (MQ=255)                                 cGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTg                                                                                                              >  7:346406/1‑148 (MQ=255)                                   aCGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAAc                                                                                                           >  6:62891/1‑149 (MQ=255)                                    cgcgTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACg                                                                                                          >  7:112160/1‑149 (MQ=255)                                       gTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCtt                                                                                                               >  8:43958/1‑141 (MQ=255)                                       gTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCtt                                                                                                               <  7:43958/141‑1 (MQ=255)                                            ctACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTgg                                                                                                    <  8:346406/147‑1 (MQ=255)                                             tACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTg                                                                                                     <  6:315404/145‑1 (MQ=255)                                             tACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTg                                                                                                     >  5:315404/1‑145 (MQ=255)                                                cAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATgc                                                                                              >  2:307308/1‑149 (MQ=255)                                                        aCCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTc                                                                                       >  7:259459/1‑148 (MQ=255)                                                           gATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATg                                                                                   <  3:174347/149‑1 (MQ=255)                                                            aTAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTc                                                                                       >  7:21615/1‑144 (MQ=255)                                                            aTAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTc                                                                                       <  8:21615/144‑1 (MQ=255)                                                            aTAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGa                                                                                  <  2:7882/149‑1 (MQ=255)                                                            aTAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGa                                                                                  <  2:13795/149‑1 (MQ=255)                                                                ccATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCa                                                                                                        >  3:126130/1‑123 (MQ=255)                                                                ccATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCa                                                                                                        <  4:126130/123‑1 (MQ=255)                                                                ccATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGAt                                                                              >  3:249186/1‑149 (MQ=255)                                                                       ccTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCt                                                                       >  1:345290/1‑149 (MQ=255)                                                                        cTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGa                                                                                  >  1:180321/1‑137 (MQ=255)                                                                        cTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGa                                                                                  <  2:180321/137‑1 (MQ=255)                                                                        cTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCtt                                                                      <  5:62891/149‑1 (MQ=255)                                                                        cTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCtt                                                                      <  4:249186/149‑1 (MQ=255)                                                                             cgcgGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTTCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGc                                                                 <  8:259459/149‑1 (MQ=255)                                                                                 gcgAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGAtt                                                                             <  7:232207/133‑1 (MQ=255)                                                                                 gcgAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGGGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGAtt                                                                             >  8:232207/1‑133 (MQ=255)                                                                                          ggtgCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCg                                                    <  2:345290/149‑1 (MQ=255)                                                                                             tacgtatcTGGTATTGCTGATTAAACCCAAGTCGAT‑TAGGTCCATGGGGCCCAGCTTCTGGAATGTTTTGGTCATCTTTGTTGTCTTTTACGCATTTGGGATTGGGTTTTCGGTGACGTTTTTAACTTCCAGCGGCTCCAGCCCCGGa                                                  <  8:156948/141‑1 (MQ=255)                                                                                                   gCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACt                                           >  4:231320/1‑149 (MQ=255)                                                                                                       gAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTTAACGCATTGGGCATGCGCATTTCGATTACGATTTCACCTTCCCGCGGGACCAGCCCCGGaaataacgg                                          >  7:156948/1‑139 (MQ=255)                                                                                                              tCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGc                                                              <  1:166334/119‑1 (MQ=255)                                                                                                              tCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGc                                                              >  2:166334/1‑119 (MQ=255)                                                                                                                 tGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGcccc                             >  1:357807/1‑149 (MQ=255)                                                                                                                     aCCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTggg                         >  8:136573/1‑149 (MQ=255)                                                                                                                        acaGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGt                      >  2:12953/1‑149 (MQ=255)                                                                                                                        acaGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGt                      >  2:18728/1‑149 (MQ=255)                                                                                                                         caGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTc                     <  7:136573/149‑1 (MQ=255)                                                                                                                            aCGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGa                   >  6:319891/1‑148 (MQ=255)                                                                                                                                          ggTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGAAACGGCCACCAACa     <  8:112160/149‑1 (MQ=255)                                                                                                                                          ggTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGAAACGGCCACCAACa     <  3:231320/149‑1 (MQ=255)                                                                                                                                             gggtgatcTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGAAACGGCCACCAACAGTg  >  5:311472/8‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                            ACGCCGTCCTTGAATGCCAGGTCACGGGTGGCCGACGCGTCTTCTACCAGGGTGCACCGATAACCATAGTCCTTGGCGCGGCGAACGGTGGTGCTGACGCTGGAATGGCTCATGAAACCACAGACGAT‑CAGGTCCAGGTGGCCCAGCTCCTGCAATGTTTCGTGCAGCTTGGTGTTCTTGAACGCATTGGGCATGCGCTTTTCGATGACGATTTCACCTTCCAGCGGCTCCAGCCCCGGAATGAACTGGCCAGCCGGCCCCTGGGGGTCGAAACGGCCACCAACAGTG  >  NC_002947/2051176‑2051463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.