| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.030) | 59 (0.950) +GCC |
46/272 | 0.5 | 96.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.030) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑G‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC > NC_002947/5555462‑5555751 | gCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggc < 7:1283‑M1/149‑3 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccc < 4:260534‑M1/147‑5 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTTTAGCCAAACGGCCCCAAAGC‑Cgcccccg > 4:366866‑M1/1‑141 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttcc < 8:69997‑M1/149‑16 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCCAAACGGCCGCAAAGCGGgccccgccaattac > 7:214854‑M1/1‑135 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtg > 4:269311‑M1/1‑129 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATACC‑Ggcccccgcaatttacccctgtaagcaacaaacctggggct > 8:106706‑M1/1‑108 (MQ=255) aTTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgc > 3:306555‑M1/1‑107 (MQ=255) aTTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgc < 4:306555‑M1/124‑18 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTTGGAGCGGCCTTGTGTCGCTAAAGGGCCGCATAGC‑Ggccccggcaatttcc < 5:79915‑M1/118‑16 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGTGCCGCATAGC‑Ggacccggcaatttcc > 6:79915‑M1/1‑103 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctagggctgcatag > 2:84544‑M1/1‑102 (MQ=255) cGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccc > 3:353066‑M1/1‑97 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctagggctgcatagcagccccag < 1:84544‑M1/149‑56 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcga < 4:353066‑M1/148‑61 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCGAAAGGGCCCCCAAGC‑Ggccccggcaatttacgcgggtattgaaccaacctggggctgggatgcagcccgttcgcgaaa > 7:255357‑M1/1‑87 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgccacaaaccatgggctggtatgaagccctttaccgaca > 8:108184‑M1/1‑87 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacaca < 3:269311‑M1/149‑65 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCCAAGC‑GGCCCCGGCAAATTACGCCTGTATGGAACAAACCAGGGGCAGGAATGCAGCCCGTTACCGACACAACGc > 4:229733/1‑149 (MQ=19) tGTCATGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggccca < 2:311599‑M1/148‑72 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCCAAAGGGCCGCATAGC‑Ggccccggcaaattacccgagtatgcaaaaaaccaggggctgctatgcaacccattagcgacacaaagcccaca > 8:94653‑M1/1‑75 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttcc > 6:242392‑M1/1‑73 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttcc < 5:242392‑M1/88‑16 (MQ=255) aTGGGTCGCCGACAGGATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa < 7:106706‑M1/148‑76 (MQ=255) gtgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaa > 8:222925‑M1/1‑71 (MQ=255) gtgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaa > 8:217275‑M1/1‑71 (MQ=255) gtgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaa < 7:217275‑M1/98‑28 (MQ=255) gtgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaa < 7:222925‑M1/98‑28 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAAGGCCCCATAGC‑GGCCCCGGCAAATTCCGCGGGGATGGAACAAACCAGGGGCAGCTATTCCGCCCATTCGCGCCCACAGGCCCACAAAGGAccc > 1:268505/1‑148 (MQ=19) gACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcag < 3:366866‑M1/149‑87 (MQ=255) cAGCAAAGCAACACCGCGCAGGTGTGGGTGCGGCCTTGGGTCCCTAACGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggatgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcagg < 3:13985‑M1/148‑88 (MQ=255) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt < 3:238521‑M1/149‑91 (MQ=255) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt < 8:214854‑M1/149‑91 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttca < 7:94653‑M1/149‑93 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagcccca < 6:384531‑M1/111‑55 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagcccca > 5:384531‑M1/1‑57 (MQ=255) gCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggc < 2:262072‑M1/114‑69 (MQ=255) gCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Cgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggc > 1:262072‑M1/1‑46 (MQ=255) gtgtGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaagggaccgcgcaggcttcaggcccggaactggcc > 3:284865‑M1/1‑40 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcta < 2:208303‑M1/83‑45 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCGAAAGGCCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcta > 1:208303‑M1/1‑39 (MQ=255) ggAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggccc < 5:153811‑M1/105‑71 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggc < 3:12177‑M1/149‑117 (MQ=255) atctgcgaacgGGCCGCATCGC‑Gcccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 3:3614‑M1/145‑127 (MQ=255) gcgAAAGGGCCGCATAGC‑Ggccccggcgaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgccacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc > 1:10813‑M1/1‑19 (MQ=255) gcgAAAGGGCCGCATAGC‑Ggccccggcgaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc > 1:16679‑M1/1‑19 (MQ=255) gcgAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 2:260235‑M1/1‑19 (MQ=255) gcgAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaac > 8:322340‑M1/1‑19 (MQ=255) cgAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga > 4:3614‑M1/1‑18 (MQ=255) cgggcCGCATCGC‑Gcccccggcaatttccgcggttatgcaccaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccaga < 8:216929‑M1/148‑136 (MQ=255) gggCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgtagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc > 6:268827‑M1/1‑13 (MQ=255) gCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatca > 5:309852‑M1/1‑11 (MQ=255) ccGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgccagcctgg < 3:229733‑M1/149‑140 (MQ=255) cGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 1:13936‑M1/149‑141 (MQ=255) gCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcc < 7:108184‑M1/149‑142 (MQ=255) cATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca < 8:196080‑M1/149‑143 (MQ=255) aTAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccag > 4:230523‑M1/1‑6 (MQ=255) aGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccagg > 3:300143‑M1/1‑4 (MQ=255) aGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccagg < 4:300143‑M1/115‑112 (MQ=255) aGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaacgcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctgg > 2:220054‑M1/1‑4 (MQ=255) gC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaagggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcac < 4:284865‑M1/149‑147 (MQ=255) gC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagca < 6:309852‑M1/148‑146 (MQ=255) | GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑G‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC > NC_002947/5555462‑5555751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |