| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.030) | 59 (0.950) +GCC |
46/272 | 0.5 | 96.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.030) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555466‑5555755 | tcactgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccc < 4:260534‑M2/1‑1 (MQ=255) actgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttttttagccaaacggccccaaagccgcccccg > 4:366866‑M2/145‑146 (MQ=255) aggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtagccaaacggccgcaaagcgggccCCGCC‑aattac > 7:214854‑M2/139‑147 (MQ=255) aggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTcc < 8:69997‑M2/12‑1 (MQ=255) attcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCgtg > 4:269311‑M2/133‑149 (MQ=255) gattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcataccggccCCCGC‑AATTTACCCCTGTAAGCAACAAACCTGGGgct > 8:106706‑M2/112‑148 (MQ=255) attagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCcgc < 4:306555‑M2/14‑1 (MQ=255) attagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCcgc > 3:306555‑M2/111‑124 (MQ=255) gtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgttggagcggccttgtgtcgctaaagggccgcatagcggccCCGGC‑AATTTcc < 5:79915‑M2/12‑1 (MQ=255) gtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagtgccgcatagcggacCCGGC‑AATTTcc > 6:79915‑M2/107‑118 (MQ=255) tcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCtagggctgcatag > 2:84544‑M2/106‑144 (MQ=255) cggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGccc > 3:353066‑M2/101‑149 (MQ=255) acatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTAGGGCTGCATAGcagccccag < 1:84544‑M2/52‑4 (MQ=255) gcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 4:353066‑M2/57‑1 (MQ=255) caactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtttagcgaaagggcccccaagcggccCCGGC‑AATTTACGCGGGTATTGAACCAACCTGGGGCTGGGATGCAGCCCGTTCGcgaaa > 7:255357‑M2/91‑147 (MQ=255) caactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCCACAAACCATGGGCTGGTATGAAGCCCTTTACCGaca > 8:108184‑M2/91‑149 (MQ=255) actccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGAcaca < 3:269311‑M2/61‑1 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCCAAGCGGCCCCGGC‑AAATTACGCCTGTATGGAACAAACCAGGGGCAGGAATGCAGCCCGTTACCGACACAACGc > 4:229733/1‑149 (MQ=19) tgtcatgtgtcgccgacagcatagcaacaccgctctggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCca < 2:311599‑M2/68‑1 (MQ=255) tcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtttcgccaaagggccgcatagcggccCCGGC‑AAATTACCCGAGTATGCAAAAAACCAGGGGCTGCTATGCAACCCATTAGCGACACAAAGCCcaca > 8:94653‑M2/79‑148 (MQ=255) atgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTcc > 6:242392‑M2/77‑88 (MQ=255) atgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTcc < 5:242392‑M2/12‑1 (MQ=255) atgggtcgccgacaggatagcaacaccgctcaggtgtgggagcggccttttgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACaaa < 7:106706‑M2/72‑1 (MQ=255) gtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGcaa < 7:222925‑M2/24‑1 (MQ=255) gtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGcaa > 8:222925‑M2/75‑98 (MQ=255) gtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGcaa > 8:217275‑M2/75‑98 (MQ=255) gtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGcaa < 7:217275‑M2/24‑1 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAAGGCCCCATAGCGGCCCCGGC‑AAATTCCGCGGGGATGGAACAAACCAGGGGCAGCTATTCCGCCCATTCGCGCCCACAGGCCCACAAAGGAccc > 1:268505/1‑148 (MQ=19) gacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAg < 3:366866‑M2/83‑1 (MQ=255) cagcaaagcaacaccgcgcaggtgtgggtgcggccttgggtccctaacgggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGATGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAgg < 3:13985‑M2/84‑1 (MQ=255) gcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCtt < 3:238521‑M2/87‑1 (MQ=255) gcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCtt < 8:214854‑M2/87‑1 (MQ=255) atagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 7:94653‑M2/89‑1 (MQ=255) atagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCagcccca > 5:384531‑M2/61‑109 (MQ=255) atagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCagcccca < 6:384531‑M2/51‑3 (MQ=255) gctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGc < 2:262072‑M2/65‑1 (MQ=255) gctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagccgccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGc > 1:262072‑M2/50‑114 (MQ=255) gtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAGGGACCGCGCAGGCTTCAGGCCCGGAACTGGcc > 3:284865‑M2/44‑147 (MQ=255) tgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTa < 2:208303‑M2/41‑1 (MQ=255) tgtgggagcggccttgtgtcgcgaaaggcccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTa > 1:208303‑M2/43‑83 (MQ=255) ggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGccc < 5:153811‑M2/67‑1 (MQ=255) agcggccttgtgtcgcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc < 3:12177‑M2/113‑1 (MQ=255) atctgcgaacgggccgcatcgcgcccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGa < 3:3614‑M2/123‑1 (MQ=255) gcgaaagggccgcatagcggccCCGGCGAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGCCACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgcc > 1:10813‑M2/23‑149 (MQ=255) gcgaaagggccgcatagcggccCCGGCGAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgcc > 1:16679‑M2/23‑149 (MQ=255) gcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAc > 8:322340‑M2/23‑121 (MQ=255) gcgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccg > 2:260235‑M2/23‑149 (MQ=255) cgaaagggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGa > 4:3614‑M2/22‑144 (MQ=255) cgggccgcatcgcgcccCCGGC‑AATTTCCGCGGTTATGCACCAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGa < 8:216929‑M2/132‑1 (MQ=255) gggccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGTAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccgc > 6:268827‑M2/17‑144 (MQ=255) gccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatca > 5:309852‑M2/15‑149 (MQ=255) ccgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGGCTCAGCTGCG‑cgccagcctgg < 3:229733‑M2/136‑6 (MQ=255) cgcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatcatc < 1:13936‑M2/137‑1 (MQ=255) gcatagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATcc < 7:108184‑M2/138‑1 (MQ=255) catagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCa < 8:196080‑M2/139‑1 (MQ=255) atagcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAg > 4:230523‑M2/10‑149 (MQ=255) agcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAgg < 4:300143‑M2/108‑1 (MQ=255) agcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAgg > 3:300143‑M2/8‑115 (MQ=255) agcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAACGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTgg > 2:220054‑M2/8‑119 (MQ=255) gcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAGGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCAc < 4:284865‑M2/143‑1 (MQ=255) gcggccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCa < 6:309852‑M2/142‑1 (MQ=255) ccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTg < 2:16679‑M2/147‑1 (MQ=255) ccCCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTg < 2:10813‑M2/147‑1 (MQ=255) | TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CCGGC‑AATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555466‑5555755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |