New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5759404 =	43 (0.680)	11 (0.230)	10/214	4.7	26.5%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759496 =	28 (0.570)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
Rejected: Coverage evenness skew score above cutoff.

TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTT  >  NC_002947/5759258‑5759532                                                                                                                                                    |                                                                                                                                   tGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCg                                                                                                                                  <  4:250887/149‑1 (MQ=255) tGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCg                                                                                                                                  <  4:245970/149‑1 (MQ=255)   cTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCggg                                                                                                                                >  5:96309/1‑149 (MQ=255)      gACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑c                                                                                                                              <  1:324877/147‑1 (MQ=255)      gACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑Cct                                                                                                                            >  7:76744/1‑149 (MQ=255)          gCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGTGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTc                                                                                                                        <  6:105336/149‑1 (MQ=255)            cTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTcgc                                                                                                                      >  8:250334/1‑149 (MQ=255)                     gAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAAcc                                                                                                             >  1:292968/1‑149 (MQ=255)                              ctgcgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTAc                                                                                                    <  2:4573/149‑1 (MQ=255)                                gcgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCCTCTTCGCGGGTAAACCCGCTCCTACg                                                                                                   <  1:22442/149‑1 (MQ=255)                                gcgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGGGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACg                                                                                                   >  2:355106/1‑148 (MQ=255)                                 cgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACg                                                                                                   >  7:155971/1‑147 (MQ=255)                                 cgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCa                                                                                                 <  2:292968/149‑1 (MQ=255)                                    ctgcCGATGCGGCCGGGGTGCCGTAGCCTGAGACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCATGTGCGGG‑CCTCTTCGCGGGTAAACCCGATCCTACGCAgg                                                                                               >  1:39777/1‑149 (MQ=255)                                    ctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCgg                                                                                                                    >  8:102208/1‑127 (MQ=255)                                    ctgcCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCgg                                                                                                                    <  7:102208/127‑1 (MQ=255)                                       ccGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGa                                                                                           <  1:345633/149‑1 (MQ=255)                                       ccGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGa                                                                                           <  7:105286/149‑1 (MQ=255)                                        cGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg                                                                                          <  3:159349/149‑1 (MQ=255)                                        cGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg                                                                                          <  3:76702/149‑1 (MQ=255)                                        cGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGGGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg                                                                                          <  1:205422/149‑1 (MQ=255)                                                ccGGTGTGCCGTAGCCTGA‑ACCTGGCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGgc                                                                                  <  7:81666/149‑1 (MQ=255)                                                 cGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGgcg                                                                                 <  8:155971/149‑1 (MQ=255)                                                        ccGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATccc                                                                          <  4:162177/149‑1 (MQ=255)                                                             gCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTa                                                                     <  2:39777/149‑1 (MQ=255)                                                             gCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGCGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTa                                                                     <  1:355106/149‑1 (MQ=255)                                                                     ccTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                              <  5:179192/149‑1 (MQ=255)                                                                      cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGCGCggg                                                             >  3:81508/1‑149 (MQ=255)                                                                      cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg                                                             >  1:24559/1‑149 (MQ=255)                                                                       tGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGt                                                            >  2:293993/1‑149 (MQ=255)                                                                           cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg                                                                                          <  4:222973/115‑1 (MQ=255)                                                                           cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg                                                                                          >  3:222973/1‑115 (MQ=255)                                                                           cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAc                                                        <  7:250334/149‑1 (MQ=255)                                                                           cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAc                                                        <  1:293993/149‑1 (MQ=255)                                                                           cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAc                                                        >  3:144545/1‑149 (MQ=255)                                                                            aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGgc                                                                                  <  7:163536/122‑1 (MQ=255)                                                                            aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGgc                                                                                  >  8:163536/1‑122 (MQ=255)                                                                                                               gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAgg                                                                                         <  7:668/80‑1 (MQ=255)                                                                                                               gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAgg                                                                                         >  8:668/1‑80 (MQ=255)                                                                                                                 aGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGGACGGCGCAATCCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGcc                   >  3:277730/1‑147 (MQ=255)                                                                                                                  gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGcccc                 >  2:62135/1‑148 (MQ=255)                                                                                                                                ggcgCTGATGTGTGGCCGGGGGGGG‑CCTCTGCGGGTTTAACCCCGCTCCTACGCTGCCCTCGGCACCGGCGAAATCCCCTTTCGGCGCGGTTTTACCCGCTAAGTGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt  <  6:96309/146‑1 (MQ=255)                                                                                                                                 gAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGAAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt  <  1:62135/149‑1 (MQ=255)                                                                                                                                            ttGCCGGCGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAccc                                                      >  4:287241/1‑86 (MQ=255)                                                                                                                                            ttGCCGGCGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAccc                                                      <  3:287241/86‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                   TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGA‑ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGG‑CCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTT  >  NC_002947/5759258‑5759532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.