New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5759404 =	43 (0.680)	11 (0.230)	10/214	4.7	26.5%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759496 =	28 (0.570)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
Rejected: Coverage evenness skew score above cutoff.

AGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGGG  >  NC_002947/5759369‑5759643                                                                                                                                |                                                                                                                                                     aGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGGACGGCGCAATCCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGcc                                                                                                                                  >  3:277730/1‑147 (MQ=255)  gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGcccc                                                                                                                                >  2:62135/1‑148 (MQ=255)                ggcgCTGATGTGTGGCCGGGGGGGGCCTCTGCGGGTTTAACCCCGCTCCTACGCTGCCCTCGGCACCGGCGAAATCCCCTTTCGGCGCGGTTTTACCCGCTAAGTGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt                                                                                                                 <  6:96309/146‑1 (MQ=255)                 gAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGAAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt                                                                                                                 <  1:62135/149‑1 (MQ=255)                                        gCCTCTTCGCGGGTAAAACCGCGGCTACGCAGGCCGAGGGAACGGCGCAATACCCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCCACAAAAAAGCGCCCCGAGAGGCGCGTTCTTTAAACCGGGAGTAATTaaagca                                                                                           >  8:325307/1‑142 (MQ=255)                                         ccTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCg                                                                                                          >  7:107423/1‑131 (MQ=255)                                         ccTCTTCGCGGGAAACCCCGCTCCTACGCCGGCCGAGGCAACGGCGCAATCCCCTGTCGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCg                                                                                                          <  8:107423/131‑1 (MQ=38)                                          ctctTGGGGGGTAAACCGGCTCCTACGCAGGCCGAGGTACCGGCGCAATCCCCTGTCGGAGCGGTTTTACCCGCTAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGt                                                                                       <  2:24559/149‑1 (MQ=255)                                              tCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGAGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGgc                                                                                   >  4:88722/1‑149 (MQ=255)                                                    gTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCa                                                                             >  1:61851/1‑149 (MQ=255)                                                     tAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAc                                                                            >  3:206737/1‑149 (MQ=255)                                                      aaaCCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAcc                                                                           >  7:66245/1‑149 (MQ=255)                                                            gCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTc                                                                              >  6:64727/1‑140 (MQ=255)                                                            gCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTc                                                                              <  5:64727/140‑1 (MQ=255)                                                                cTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTg                                                                                             <  2:267287/121‑1 (MQ=255)                                                                cTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTg                                                                                             >  1:267287/1‑121 (MQ=255)                                                                cTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg                                                                  >  8:353122/1‑148 (MQ=255)                                                                cTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACACGCTTCCTg                                                                  >  4:336053/1‑148 (MQ=255)                                                                 tcctcAGGCGGAGGCAACGCCTCAATCCCCTTTTTGAGGGGTTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCa                                                                <  4:81508/145‑1 (MQ=255)                                                                 tACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCa                                                                >  7:290556/1‑149 (MQ=255)                                                                        gCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTg                                                         <  3:88722/149‑1 (MQ=255)                                                                        gCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTg                                                         <  8:290556/149‑1 (MQ=255)                                                                                  cGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgc                                               >  3:106413/1‑149 (MQ=255)                                                                                   ggCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcg                                              >  4:243692/1‑149 (MQ=255)                                                                                    gcgcAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcgc                                             <  7:325307/149‑1 (MQ=255)                                                                                       cAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTa                                          >  5:56574/1‑149 (MQ=255)                                                                                            cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAgg                                      <  4:206737/148‑1 (MQ=255)                                                                                               tGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGt                                  >  4:164799/1‑149 (MQ=255)                                                                                                 tAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTc                                 >  3:284295/1‑148 (MQ=255)                                                                                                 tAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTc                                 <  2:61851/148‑1 (MQ=255)                                                                                                        gggTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGa                         >  2:334363/1‑149 (MQ=255)                                                                                                          gTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGAcc                       >  6:378498/1‑149 (MQ=255)                                                                                                              aCCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc                                                                        <  6:327487/96‑1 (MQ=255)                                                                                                              aCCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc                                                                        >  5:327487/1‑96 (MQ=255)                                                                                                                ccGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACt                                                                                              >  2:103605/1‑72 (MQ=255)                                                                                                                ccGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACt                                                                                              <  1:103605/72‑1 (MQ=255)                                                                                                                ccGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGa                  >  8:10162/1‑148 (MQ=255)                                                                                                                  gcgAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAg               >  7:201649/1‑149 (MQ=255)                                                                                                                  gcgAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAg               >  3:366173/1‑149 (MQ=255)                                                                                                                       gagGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCa          <  3:243692/149‑1 (MQ=255)                                                                                                                          gCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAgcg       >  3:194695/1‑149 (MQ=255)                                                                                                                               cg‑cCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCggg  <  6:56574/149‑1 (MQ=255)                                                                                                                                |                                                                                                                                                     AGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCG‑CCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGGG  >  NC_002947/5759369‑5759643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.