| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 301439 = | 68 (1.060) | 3 (0.050) | 3/242 | NT | 5.0% | coding (358/741 nt) | ompR | two‑component system DNA‑binding response regulator |
| ? | NC_002947 | 301496 = | 49 (0.800) | coding (415/741 nt) | ompR | two‑component system DNA‑binding response regulator | |||||
CGGTGGTGAGCATGTGCACTTCGTTGCCACGCTTGAGCTCGCGGGTGGCCAGCGACAGCTCATAGTCGCCGAAGGTGACCGACTCGTCCTCGCTGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/301589‑301439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAAGTGCACATGCTCACCACCGGCGAGTTCGCTGTGCTCAAGGCTCTGGTGATGCACGCCCGCGAGCCGTTGACCC > NC_002947/301496‑301643 CGGTGGTGAGCATGTGCACTTCGTTGCCACGCTTGAGCTCGCGGGTGGCCAGCGACAGCTCATAGTCGCCGAAGGTGACCGACTCGTCCTCGCTGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGG < 6:361378/149‑1 GCTGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGGGCAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGTCCGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAA < 1:55025/136‑1 GCTGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGGGCAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAA > 2:55025/1‑135 TGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGGGCAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAAGTGCACATGCTCACCA > 3:151782/1‑149 CCGGGCAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAAGTGCACATGCTCACCACCGGCGAGTTCGCTGTGCTCAAGGCTCTGGTGATGCACGCCCGCGAGCCGTT < 3:395465/149‑1 CAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAAGTGCACATGCTCACCACCGGCGAGTTCGCTGTGCTCAAGGCTCTGGTGATGCACGCCCGCGAGCCGTTGACCC < 8:213130/149‑1 CGGTGGTGAGCATGTGCACTTCGTTGCCACGCTTGAGCTCGCGGGTGGCCAGCGACAGCTCATAGTCGCCGAAGGTGACCGACTCGTCCTCGCTGCCCGGCGCACCCGGCACGCTCGGCGCCTGACGACGCAGCACCGCCTTGACCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/301589‑301439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcAGCGAGGACGAGTCGGTCACCTTCGGCGACTATGAGCTGT‑CGCTGGCCACCCGCGAGCTCAAGCGTGGCAACGAAGTGCACATGCTCACCACCGGCGAGTTCGCTGTGCTCAAGGCTCTGGTGATGCACGCCCGCGAGCCGTTGACCC > NC_002947/301496‑301643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |