| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 341408 = | 69 (1.080) | 5 (0.080) | 5/246 | NT | 7.4% | intergenic (‑302/‑76) | PP_5438/gabP‑I | hypothetical protein/gamma‑aminobutyrate permease |
| ? | NC_002947 | 341438 = | 59 (0.950) | intergenic (‑332/‑46) | PP_5438/gabP‑I | hypothetical protein/gamma‑aminobutyrate permease | |||||
GCCAGCGATGGACAGCATGGTCACATGCCGTTGTTTGAGCCCCTGAGCGAGGTCATTGGAATTGTTACCGCTCATTGAAACTACCTTTGTAAGGAGTGGACCACGCCGACTGCGGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/341558‑341408‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCATCGCTGGCGTCATCGGTGCCGGCCTGTTCGTAG > NC_002947/341438‑341583 GCCAGCGATGGACAGCATGGTCACATGCCGTTGTTTGAGCCCCTGAGCGAGGTCATTGGAATTGTTACCGCTCATTGAAACTACCTTTGTAAGGAGTGGACCACGCCGACTGCGGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCG > 6:285827/1‑149 CCAGCGATGGACAGCATGGTCACATGCCGTTGTTTGAGCCCCTGAGCGAGGTCATTGGAATTGTTACCGCTCATTGAAACTACCTTTGTAAGGAGTGGACCACGCCGACTGCGGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGC > 6:210436/1‑149 ACCACGCCGACTGCGGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGCT‑‑‑‑‑‑‑‑GCAATCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGCCCAT > 6:380030/1‑149 GGGTACAGAGCGCGCCAGGGGATGACCTTGGCGTCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGC < 1:137086/133‑1 GGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGC > 2:137086/1‑133 GTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCA > 1:366441/1‑149 CGCGCCAGGGGATGACCTAGGCGTCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCATCGCTGGC < 2:366441/149‑1 CGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCATCGCTGGCGTCATCGGTGCCGGCCTGTTCGTA < 3:191029/149‑1 GCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCATCGCTGGCGTCATCGGTGCCGGCCTGTTCGTAG < 6:412913/149‑1 GCCAGCGATGGACAGCATGGTCACATGCCGTTGTTTGAGCCCCTGAGCGAGGTCATTGGAATTGTTACCGCTCATTGAAACTACCTTTGTAAGGAGTGGACCACGCCGACTGCGGGTACAGAGCGCGCCAGGGGATGACCTAGGCGTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/341558‑341408‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGACCTCGCTCAGGGGCTCAAACAACGGCATGTGACCATGCTGTCCATCGCTGGCGTCATCGGTGCCGGCCTGTTCGTAG > NC_002947/341438‑341583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |