New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 497823 = | 75 (1.170) | 4 (0.070) | 3/240 | NT | 5.6% | coding (1695/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
? | NC_002947 | 497875 = | 64 (1.060) | coding (1747/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
GGTCAGCATCTGCCCCAGTTCATCATGCACTTCCCGGGCGATACGGGCTTTTTCCTCTTCACGCACGCTCTCCAGGTGGGCCGAGAGTTCGCGCAGCTGCTCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/497976‑497823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcccagGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATGCC > NC_002947/497875‑498018 GGTCAGCATCTGCCCCAGTTCATCATGCACTTCCCGGGCGATACGGGCTTTTTCCTCTTCACGCACGCTCTCCAGGTGGGCCGAGAGTTCGCGCAGCTGCTCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGT < 7:369397/149‑1 AGCATCTGCCCCAGTTCATCATGCACTTCCCGGGCGATACGGGCTTTTTCCTCTTCACGCACGCTCTCCAGGTGGGCCGAGAGTTCGCGCAGCTGCTCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCC > 4:91269/1‑147 TTCGCGCAGCTGCTCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCC > 6:254634/1‑65 TCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGAT > 4:36404/1‑149 TCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGG < 3:50495/142‑1 TCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCAGGAGAGCGAGCGTGAAGAGGAAAAAGCCCGTCTCCCCCGGGAACTTCATGATCAACTGGGagaaac > 4:50495/1‑143 GCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGC < 3:36404/148‑1 GTCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATG < 1:278398/149‑1 TCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATG < 5:34660/148‑1 TCCCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATG > 6:34660/1‑148 CCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATGCC > 7:181330/1‑148 CCAGGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCG < 6:219292/72‑1 GGTCAGCATCTGCCCCAGTTCATCATGCACTTCCCGGGCGATACGGGCTTTTTCCTCTTCACGCACGCTCTCCAGGTGGGCCGAGAGTTCGCGCAGCTGCTCCTGGGACTTCGCCAGCGCCAGCTCGGCCCGCTTGCCCTGTGTGATGTCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/497976‑497823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcccagGAGCAGCTGCGCGAACTCTCGGCCCACCTGGAGAGCGTGCGTGAAGAGGAAAAAGCCCGTATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTGACCGTGCTCAAGCTGGAAGTGTCGATGTGCGAGCTGGCCTATGCC > NC_002947/497875‑498018 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |