New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 746960	NA (NA)	39 (0.610)	34/252	NT	83.1%	intergenic (‑87/‑707)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 748238	8 (0.130)					coding (291/819 nt)	PP_5449	hypothetical protein

TTCGAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/746813‑746960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTGCC  <  NC_002947/748238‑748091                                                                                                                                                                                                                                                                                                           TTCGAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC                                                                                                                                                      >  4:372652/1‑149  TCGAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC                                                                                                                                                      <  8:166633/148‑1           CACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGT‑GGGATGATGGATCCCTTACAAACTTCGCT                                                                                                                                            >  4:162405/1‑148                    GGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGT                                                                                                                                   <  7:291207/149‑1                     GGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGC                                                                                                                                             >  1:391896/1‑138                     GGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGC                                                                                                                                             <  2:391896/138‑1                          GAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGC                                                                                                                              <  4:68710/148‑1                            GGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTC                                                                                                                           <  1:105116/149‑1                             GTAGACTTTTTCGACTTTGCTGTCGTGGCGCATCATTGCGGGCTGGCTCCATAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTC                                                                                                                           <  1:369781/148‑1                             GTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTC                                                                                                                           <  4:231643/148‑1                                GACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCTCAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TC                                                                                                                       <  1:119545/148‑1                                GACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCA                                                                                                                      <  7:123825/149‑1                                GACTTTTTCGACTTTGCTGTAGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCA                                                                                                                      >  1:321468/1‑149                                                          GCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCAC                                                                                                                     >  3:84148/1‑124                                                          GCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCAC                                                                                                                     <  4:84148/124‑1                                                              CATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGC                                                                                                                                             >  8:87591/1‑97                                                              CATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGC                                                                                                                                             <  7:87591/97‑1                                                                            TCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCA                                                                          >  4:205305/1‑149                                                                                GAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCT                                                                      >  7:376116/1‑149                                                                                  AAGAAATGGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGT‑GGTATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTT                                                                   <  3:162405/149‑1                                                                                  AAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTT                                                                     <  8:376116/148‑1                                                                                      AATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTA                                                                                                             >  1:169124/1‑104                                                                                      AATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTA                                                                                                             <  2:169124/104‑1                                                                                           GGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACG                                                           >  8:103410/1‑149                                                                                              GCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTG                                                        <  3:205305/149‑1                                                                                                      TCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACC                                                >  8:43197/1‑149                                                                                                       CGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACC                                                >  8:11141/1‑148                                                                                                                 GTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAA                                     <  7:103410/149‑1                                                                                                                  TGGACGGTTGGAATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCAGTCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACACACCGGCTTAA                                     >  1:327997/1‑149                                                                                                                              ATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAA                                     >  5:112568/1‑136                                                                                                                              ATGTGGGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAA                                     <  6:112568/136‑1                                                                                                                                   GGGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATAT                   <  2:327997/149‑1                                                                                                                                    GGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAA                                                                                        >  6:355539/1‑79                                                                                                                                    GGATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAA                                                                                        <  5:355539/79‑1                                                                                                                                     GATGATGGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCT                 >  6:128640/1‑149                                                                                                                                           GGATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAA            >  1:343070/1‑148                                                                                                                                            GATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAA           <  5:128640/148‑1                                                                                                                                            GATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAA           <  2:343070/148‑1                                                                                                                                            GATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGC               <  4:91190/144‑1                                                                                                                                            GATCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGC               >  3:91190/1‑144                                                                                                                                              TCCCTTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATC        >  3:27790/1‑149                                                                                                                                                  TTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTG    >  1:277413/1‑149                                                                                                                                                  TTACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTG    >  8:162155/1‑149                                                                                                                                                    ACAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTGC   <  7:43197/148‑1                                                                                                                                                     CAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTGCC  >  3:197754/1‑148                                                                                                                                                                                                                                                                                                           TTCGAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/746813‑746960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACTTCGCTCATCAACGTTACGCTTCA‑TCACCAATCGTAACGAGCTATTTTTATCATCAAGGATGAGCTTCCCATCCTTTTGCGAAACGCTGAGCTTACCCACCGGCTTAATACCAGATGCGACAATATCTGCGAAAATCTCTGCC  <  NC_002947/748238‑748091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.