| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 885134 | 56 (0.880) | 3 (0.050) | 3/238 | NT | 5.2% | coding (1045/2718 nt) | PP_0767 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 885159 | 56 (0.930) | coding (1070/2718 nt) | PP_0767 | LuxR family transcriptional regulator | |||||
CCAGGAGCGTTTCTGCGCTCCGCTTTGCGATGCGATGCGTGGCCGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/884980‑885134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctgcGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC < NC_002947/885159‑885013 CCAGGAGCGTTTCTGCGCTCCGCTTTGCGATGCGATGCGTGGCCGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCC > 1:162547/1‑148CCAGGAACGTTTCTGCGCTCCGCTTTGCGATGCGATGCGTGGCCGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCC < 2:90655/148‑1 CAGGAGCGTTTCTGCGCTCCGCTTTGCGATGCGATGCGTGGCCGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGA > 5:4047/1‑149 CGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGACCTGCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGA > 3:33028/1‑147 CGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGACCTGCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGA < 4:33028/147‑1 GCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGACCTGCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAA < 6:4047/149‑1 GACCTGCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCATTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCAC < 2:326149/149‑1 CTGCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCA > 6:388501/1‑149 GCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC > 2:93766/1‑149 GCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC > 5:155439/1‑149 GCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC > 8:280273/1‑149 GCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAG < 5:399886/113‑1 GCGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAG > 6:399886/1‑113 CGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC < 5:39098/148‑1 CCAGGAGCGTTTCTGCGCTCCGCTTTGCGATGCGATGCGTGGCCGCCACGACAGCGCCGCCGTCCTGAGCTTCCTGCAGGCGCATCAGGTGTTCCTTGTGCCGCTGGACGAGCATGGCCACTGGTTCCGCTATCACCATTTGTTCTCCGACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/884980‑885134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctgcGATTCGCTCGCCTGGCGGCTGCGCAGCAGGTCGGAGAACAAATGGTGATAGCGGAACCAGTGGCCATGCTCGTCCAGCGGCACAAGGAACACCTGATGCGCCTGCAGGAAGCTCAGGACGGCGGCGCTGTCGTGGCGGCCACGCATC < NC_002947/885159‑885013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |