New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1149459 =	56 (0.880)	4 (0.070)	4/240	NT	6.6%	coding (295/513 nt)	PP_1008	RNA polymerase subunit sigma‑24
	?	NC_002947	1149519 =	61 (1.010)					coding (235/513 nt)	PP_1008	RNA polymerase subunit sigma‑24

GCCCATCGAGCACATCGAGCCGTTCGTGTTTCAGACCGCGCGCAACCTGGCGCTGGACCACCTGCGTGCACGCCGGGTGCAGGCACGCATGCTGGTCGACGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1149607‑1149459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcaTGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGCCG  >  NC_002947/1149519‑1149665                                                                                                                                                                                                                                                                                                          GCCCATCGAGCACATCGAGCCGTTCGTGTTTCAGACCGCGCGCAACCTGGCGCTGGACCACCTGCGTGCACGCCGGGTGCAGGCACGCATGCTGGTCGACGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCA                                                                                                                                                     <  3:281239/149‑1                                                                                   GCACGCATGCTGGTCGACGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTC                                                                   >  3:283166/1‑149                                                                                    CACGCATGCTGGTCGACGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTC                                                                   >  5:86428/1‑148                                                                                                    CGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCA                                                  <  4:283166/149‑1                                                                                                                                 TCGCCGCGCCAGCCACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCC                     <  6:86428/149‑1                                                                                                                                               ACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTC       <  8:209003/149‑1                                                                                                                                               ACCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTC       >  7:209003/1‑149                                                                                                                                                CCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCG      >  2:78359/1‑149                                                                                                                                                CCAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGCTCCAGGGCCAGGTTGCGCGCGGTCTACAACACGAACGGCTAGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCG      >  7:267123/1‑149                                                                                                                                                 CAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAG             >  5:349765/1‑141                                                                                                                                                 CAGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAG             <  6:349765/141‑1                                                                                                                                                  AGCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGC    <  6:272083/149‑1                                                                                                                                                   GCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGCC   >  7:186140/1‑149                                                                                                                                                   GCATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGCC   >  6:310438/1‑149                                                                                                                                                    CATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGCCG  >  8:310774/1‑149                                                                                                                                                    CATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAG                <  4:56428/135‑1                                                                                                                                                    CATGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAG                >  3:56428/1‑135                                                                                                                                                                                                                                                                                                          GCCCATCGAGCACATCGAGCCGTTCGTGTTTCAGACCGCGCGCAACCTGGCGCTGGACCACCTGCGTGCACGCCGGGTGCAGGCACGCATGCTGGTCGACGACGTGCCCGACGAAGTGCTGCACAGTGTCGCCGCGCCAGCCACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1149607‑1149459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcaTGCGTGCCTGCACCCGGCGTGCACGCAGGTGGTCCAGCGCCAGGTTGCGCGCGGTCTGAAACACGAACGGCTCGATGTGCTCGATGGGCCGCTCGCCCAGCGCGCGGGACACCCGCAGGTAGGTTTCCTGCAGCAGGTCTTCGGCCG  >  NC_002947/1149519‑1149665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.