| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1205682 = | 56 (0.880) | 4 (0.060) | 4/246 | NT | 6.6% | coding (80/546 nt) | PP_1057 | PadR family transcriptional regulator |
| ? | NC_002947 | 1205719 = | 59 (0.950) | coding (43/546 nt) | PP_1057 | PadR family transcriptional regulator | |||||
AAGGGCTTGTCTTTAGATATATCTTGAGTAATATCTTACGATATATCGCAAACGACGGAGCCCTATCCCTATGCGCGAACATCCCCCTCATGATCCCTTCGAGCGGCGCCCCGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1205831‑1205682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGATGT > NC_002947/1205719‑1205865 AAGGGCTTGTCTTTAGATATATCTTGAGTAATATCTTACGATATATCGCAAACGACGGAGCCCTATCCCTATGCGCGAACATCCCCCTCATGATCCCTTCGAGCGGCGCCCCGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGG > 2:374013/1‑149 AGGGCTTGTCTTTAGATATATCTTGAGTAATATCTTACGATATATCGCAAACGACGGAGCCCTATCCCTATGCGCGAACATCCCCCTCATGATCCCTTCGAGCGGCGCCCCGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGG < 3:45656/148‑1 CGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGA > 1:124639/1‑107 CGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGA < 2:124639/107‑1 TGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGAT > 3:33229/1‑102 TGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGAT < 4:33229/102‑1 CGGGCGGGGCGCCGCTCGCAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGAT < 8:274506/149‑1 CGGGCGGGGCGCCGCTCGAAGGGATCATGAGTGTGATGTTCTCGCATAGGGATATGGCTCCGTCGTTTGCGATATATCGTAATATATTACTCAAGATATATCTAAAGAGAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGAT < 2:147411/149‑1 CGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGAT < 2:391142/149‑1 CGGGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGAT < 4:249916/149‑1 GGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCGTTCAATGCTGATGATTATCATCTACTGCGTCGATGT > 5:340603/1‑149 GGCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGATG < 6:340603/148‑1 AAGGGCTTGTCTTTAGATATATCTTGAGTAATATCTTACGATATATCGCAAACGACGGAGCCCTATCCCTATGCGCGAACATCCCCCTCATGATCCCTTCGAGCGGCGCCCCGCCCGTGGCGAGCGCGGCCCGCGTGTCTTCGCCCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1205831‑1205682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggCGGGGCGCCGCTCGAAGGGATCATGAGGGGGATGTTCGCGCATAGGGATAGGGCTCCGTCGTTTGCGATATATCGTAAGATATTACTCAAGATATATCTAAAGACAAGCCCTTCAATGCTGATGATTATCATCTACTGCGTCGATGT > NC_002947/1205719‑1205865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |