| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1311719 | 48 (0.750) | 8 (0.140) | 7/228 | NT | 17.6% | intergenic (‑187/+91) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| ? | NC_002947 | = 1311778 | 32 (0.560) | intergenic (‑246/+32) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA | |||||
GTCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1311561‑1311719‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCC < NC_002947/1311778‑1311633 GTCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGT > 6:358332/1‑149GTCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGT > 2:129172/1‑149 CTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGG > 1:283823/1‑149 CGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAG > 4:209737/1‑149 CGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGA < 4:383307/148‑1 GCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGC < 1:299626/149‑1 TACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTG < 1:210209/140‑1 TACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTG > 2:210209/1‑140 CAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGC > 7:21424/1‑149 CTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAGATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGAACGCCCGCGAACACCGGCAAAGCCGTTGGCATCCACCGCAG > 1:111967/1‑149 ATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC < 2:111967/148‑1 GGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC > 6:141789/1‑146 GGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC < 5:141789/146‑1 TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCC > 3:129234/1‑106 TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCAACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCC < 4:129234/106‑1 TTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGTGGGCTCGCCCGCTCCCACA > 7:278511/1‑106 TTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGTGGGCTCGCCCGCTCCCACA < 8:278511/106‑1 GGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC > 5:124987/1‑68 GGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC < 6:124987/68‑1 GAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGTATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATT > 3:100983/1‑149 GAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGC < 2:79988/56‑1 GAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGC > 1:79988/1‑56 AGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTG > 3:133205/1‑149 GGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGGATTAGGGCGCCCAATTTATTCGTCACTGCGATTGGAGTTTTAACCAAATCGTAGAAATCATTGTagt > 1:191579/1‑146 GTCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCA‑ATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1311561‑1311719‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCC < NC_002947/1311778‑1311633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |