New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1314117 =	56 (0.880)	4 (0.060)	4/246	NT	7.1%	coding (540/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	1314174 =	51 (0.820)					coding (483/2847 nt)	rapA	RNA polymerase‑associated protein RapA

CAACACCCTGCAGCACACCAGCAAGCAGATGCAGTCGGCACTGTGGGGGTTGGGCGGCTGCCGCGCACAGCCCATCGCCCACCAACTGCACATTGCCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1314267‑1314117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGGGT  >  NC_002947/1314174‑1314263                                                                                                                                                                                                                                                   CAACACCCTGCAGCACACCAGCAAGCAGATGCAGTCGGCACTGTGGGGGTTGGGCGGCTGCCGCGCACAGCCCATCGCCCACCAACTGCACATTGCCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGG                                                                                              <  3:174748/149‑1  AACACCCTGCAGCACACCAGCAAGCAGATGCAGTCGGCACTGTGGGGGTTGGGCGGCTGCCGCGCACAGCCCATCGCCCACCAACTGCACATTGCCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGG                                                                                             >  3:116782/1‑149                                                                                                CCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGCAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGG    >  7:218507/1‑144                                                                                                CCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGCAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGG    <  8:218507/144‑1                                                                                                 CCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGCAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGGGT  <  5:48734/145‑1                                                                                                 CCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGCAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGGGT  >  6:48734/1‑145                                                                                                                                                                                                                                                   CAACACCCTGCAGCACACCAGCAAGCAGATGCAGTCGGCACTGTGGGGGTTGGGCGGCTGCCGCGCACAGCCCATCGCCCACCAACTGCACATTGCCCGCGAAGTCGCCGACCGCAGCGCCCCGCGCGTTCTGCTGGCCGACGAAGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1314267‑1314117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAATGTGCAGTTGGTGGGCGATGGGCTGTGCGCGGCAGCCGCCCAACCCCCACAGTGCCGACTGCATCTGCTTGCTGGTGTGCTGCAGGGT  >  NC_002947/1314174‑1314263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.