New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1652057 =	45 (0.700)	3 (0.050)	3/238	NT	6.1%	coding (612/636 nt)	PP_1448	membrane protein
	?	NC_002947	1652119 =	51 (0.850)					intergenic (+38/+123)	PP_1448/PP_1449	membrane protein/hypothetical protein

ATTTCTCTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCGCTACAGGTCAAGCCAGCCTGTGCAGCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1652126‑1652057 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccccgcAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGCATGCT  >  NC_002947/1652119‑1652265                                                                                                                                                                                                                           ATTTCTCTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCGCTACAGGTCAAGCCAGCCTGTGCAGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCA                                                                      >  5:156442/1‑149        TGCGGGGGCGGGCTTGCCCGCGAAGAGGCCGCTACAGGTCAAGCCAGCCTGTGCAGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGG                                                                                                                         <  3:213978/91‑1        TGCGGGGGCGGGCTTGCCCGCGAAGAGGCCGCTACAGGTCAAGCCAGCCTGTGCAGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGG                                                                                                                         >  4:213978/1‑91                                                                aCCCCGCAGAGAAATCACAAGCCCAAGGGATGTGGTATTCGCTGTGTAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGC       <  7:372848/148‑1                                                                CCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGC       <  2:75916/149‑1                                                                CCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGC       <  8:186230/149‑1                                                                     GCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGCATGCT  <  5:299055/149‑1                                                                                                                                                                                                                           ATTTCTCTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCGCTACAGGTCAAGCCAGCCTGTGCAGCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1652126‑1652057 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccccgcAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAAGATTGCTGATATCCCCAAATGGCCAGGGCCGCGATGGCGTCTTAGTGCTTCTTCCCTTGCATGCT  >  NC_002947/1652119‑1652265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.