New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1652057 =	45 (0.700)	3 (0.050)	3/238	NT	6.1%	coding (612/636 nt)	PP_1448	membrane protein
	?	NC_002947	1652119 =	51 (0.850)					intergenic (+38/+123)	PP_1448/PP_1449	membrane protein/hypothetical protein

GTTGTGGCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAA  >  NC_002947/1651910‑1652200                                                                                                                                                    |                                                                                                                                                gTTGTGGCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGc                                                                                                                                                >  5:209753/1‑149 (MQ=255) agcatgcaagggaagaagcactaagacgccatcgcggccctggccatttggggatatcagcaatcttgtgccctgctgctgacacccgggccgcgtgcctcccgcttccacagcgaataccacagcccttgggcttgtgatttctctGc                                                                                                                                                <  5:299055‑M1/2‑1 (MQ=255)  ttGTGGCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCg                                                                                                                                               >  5:20065/1‑149 (MQ=255)      gcaagggaagaagcactaagacgccatcgcggccctggccatttggggatatcagcaatcttgtgccctgctgctgacacccgggccgcgtgcctcccgcttccacagcgaataccacagcccttgggcttgtgatttctctGCggggg                                                                                                                                           <  8:186230‑M1/7‑1 (MQ=255)      gcaagggaagaagcactaagacgccatcgcggccctggccatttggggatatcagcaatcttgtgccctgctgctgacacccgggccgcgtgcctcccgcttccacagcgaataccacagcccttgggcttgtgatttctctGCggggg                                                                                                                                           <  2:75916‑M1/7‑1 (MQ=255)      gcaagggaagaagcactaagacgccatcgcggccctggccatttggggatatcagcaatcttgtgccctgctgctgacacccgggccgcgtgcctcccgcttacacagcgaataccacatcccttgggcttgtgatttctctGcggggt                                                                                                                                           <  7:372848‑M1/7‑2 (MQ=255)       gCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACTCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGc                                                                                                                                          <  8:280685/149‑1 (MQ=255)       gCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGc                                                                                                                                          >  2:253498/1‑149 (MQ=255)                 gagaTTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAggct                                                                                                                                >  3:51331/1‑149 (MQ=255)                    aTTGCCGTCAATGCCTACCCGTCCATCGAGGCGGCCCCCCGGGGGTCTGGGCAGGTGAGGCGCAACGCCCTGGGGGGGCTGGCGGGTGTCTGGGGGAAAGGCCTGGGGTTGCTTGGGCGGCAGCGGGGGCGGGGGCTGCACAggctggc                                                                                                                             <  2:272513/149‑1 (MQ=255)                            cTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTg                                                                                                                     >  7:293231/1‑149 (MQ=255)                             gatcccTACCCGACCCTCGCTGGCGCCCGCCTGGGGTATGGTCAGGTTACGGGCACCCCCCTTGTGTGGCGGGCGGGTTTCTGGGTGATAGCTCTGGTGTTGCTTGGGCTGGAGCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGt                                                                                                                    <  6:209753/145‑1 (MQ=255)                                         ttCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGTGCTGGATCGGTGGCGGGGGCTGCACAGCCTGGCTTGACCTGTAGCGGACTCTTc                                                                                                        >  8:351167/1‑149 (MQ=255)                                             tCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCgg                                                                                                    >  7:6070/1‑149 (MQ=255)                                             tCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCgg                                                                                                    >  7:182143/1‑149 (MQ=255)                                                    ccgaactcTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGCTAGGGCGGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAgc                                                                                              <  5:28361/141‑1 (MQ=255)                                                     gCCAGCCTGGGGTATGGGCAGGTGATGCTCAAAGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCCAcccc                                                                                            >  7:257896/1‑149 (MQ=255)                                                            tGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAgc                                                                                              >  6:28361/1‑140 (MQ=255)                                                                     tgccctgctgctgacacccgggccgcgtgcctcccgcttccacagcgaataccacagcccttgggcttgtgatttctctGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAAt                                                                            >  5:156442‑M1/80‑149 (MQ=255)                                                                     ggCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAAt                                                                            >  7:186230/1‑149 (MQ=255)                                                                      gCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTcgc                                                                                                      <  4:120139/122‑1 (MQ=255)                                                                      gCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTcgc                                                                                                      >  3:120139/1‑122 (MQ=255)                                                                      gCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATc                                                                           <  8:293231/149‑1 (MQ=255)                                                                             aTGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGcc                                                                    >  5:73209/1‑149 (MQ=255)                                                                                   aaCGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAg                                                                                                                                   >  6:94508/1‑80 (MQ=255)                                                                                   aaCGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAggg                                                              >  7:315342/1‑149 (MQ=255)                                                                                   aaCGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAggg                                                              >  4:377619/1‑149 (MQ=255)                                                                                       cccTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCtgt                                                          <  6:20065/149‑1 (MQ=255)                                                                                        ggttGGGGTGTGGGCGGGTTTCTTGGTTTTATGGCTGGTTTTGCTTGGGATGTATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCtgtg                                                         <  7:351167/147‑1 (MQ=255)                                                                                        cgttGGTGTTCTGGCGGGTTTCTGGGTGATAGGGCTGGGTTTGGTTGGTCTGGATGGTTTGGGGGGTCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCACCCGCAGAGAAATCACAAGCCCAAGGGCtgtg                                                         <  2:339839/147‑1 (MQ=255)                                                                                        ccTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCtgtg                                                         <  6:73209/149‑1 (MQ=255)                                                                                            ggggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCggg                                                                                                   <  2:208475/103‑1 (MQ=255)                                                                                            ggggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCggg                                                                                                   >  1:208475/1‑103 (MQ=255)                                                                                             gggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGccc                                                                   <  5:56926/134‑1 (MQ=255)                                                                                             gggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGccc                                                                   >  6:56926/1‑134 (MQ=255)                                                                                             gggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGccc                                                                   <  1:404341/134‑1 (MQ=255)                                                                                             gggTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGccc                                                                   >  2:404341/1‑134 (MQ=255)                                                                                                    ggCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCtgtg                                             <  8:182143/149‑1 (MQ=255)                                                                                                       gggTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTgg                                            >  5:407323/1‑147 (MQ=255)                                                                                                             cTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCgg                                      >  7:70964/1‑147 (MQ=255)                                                                                                             cTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTCTGGAATTCGCTGTGGAAGCgg                                      >  4:304139/1‑147 (MQ=255)                                                                                                              tGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAg                                   >  5:16148/1‑149 (MQ=255)                                                                                                                ggggATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGa                                    <  8:315342/146‑1 (MQ=255)                                                                                                                      aGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGc                                                                     <  3:315579/107‑1 (MQ=255)                                                                                                                      aGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGc                                                                     >  4:315579/1‑107 (MQ=255)                                                                                                                        ccacagcccttgggcttgtgatttctctGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCa                                                                                   >  4:213978‑M1/29‑91 (MQ=255)                                                                                                                        ccacagcccttgggcttgtgatttctctGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCa                                                                                   <  3:213978‑M1/63‑1 (MQ=255)                                                                                                                         gCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAgg                                  <  3:256567/139‑1 (MQ=255)                                                                                                                         gCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAgg                                  >  4:256567/1‑139 (MQ=255)                                                                                                                           tGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCgg                      <  4:51331/149‑1 (MQ=255)                                                                                                                                   cTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCtgtg                                                         >  7:247235/1‑106 (MQ=255)                                                                                                                                   cTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCtgtg                                                         <  8:247235/106‑1 (MQ=255)                                                                                                                                        gCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTcagcagcag         <  6:16148/149‑1 (MQ=255)                                                                                                                                            gATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGca     >  5:120371/1‑149 (MQ=255)                                                                                                                                                ggTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACaa  <  4:285826/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                GTTGTGGCGGGGGAGTGAGATTGGCGTCTATGCCTACCCGTTCATCGATGTGGCCAGCCTGGGGTATGGGCAGGTGATGCTCAACGCCCTTGGGGTGCTGGCGGGTTTCTGGGGGATAGGGCTGGTGTTGCTTGGGCTGGATCGGTGGCGGGGGCTGCACAGGCTGGCTTGACCTGTAGCGGCCTCTTCGCGGGCAAGCCCGCCCCCGCAGAGAAATCACAAGCCCAAGGGCTGTGGTATTCGCTGTGGAAGCGGGAGGCACGCGGCCCGGGTGTCAGCAGCAGGGCACAA  >  NC_002947/1651910‑1652200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.