New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 209995739 (0.610)8 (0.140) 6/234 NT 17.6% intergenic (‑68/‑137) PP_1875/PP_1876 two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
?NC_002947 = 2100056 39 (0.660)intergenic (‑167/‑38) PP_1875/PP_1876 two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2099801‑2099957
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggccgctGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGA  <  NC_002947/2100056‑2099921
                                                                                                                                                                                                                                                                                                     
AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTATCTGTTCATTTCAGTTGATCGCCAAGCG                                                                                                                                                   <  5:393550/148‑1
 ACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGG                                                                                                                                                 <  3:37354/149‑1
  CCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGG                                                                                                                                                >  1:241235/1‑149
   CGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGG                                                                                                                                               <  3:103584/149‑1
    GGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGcccc                                                                                                                                              <  6:399331/149‑5
                                   CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGC                                                                                                                                           >  3:302595/1‑121
                                   CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGC                                                                                                                                           <  4:302595/121‑1
                                                            GTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGC                                                                                                                                           <  1:44048/96‑1
                                                            GTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGC                                                                                                                                           >  2:44048/1‑96
                                                              TTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGG                                                                                    >  8:100053/1‑149
                                                                 CCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTA                                                                                 >  3:5508/1‑149
                                                                                 GCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGG                                                                  >  1:274580/1‑148
                                                                                     GCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG                                                             <  7:100053/149‑1
                                                                                     GCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG                                                             <  2:274580/149‑1
                                                                                     GCATAGCCGAATAGCCCCGGCTGCTGGGGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTATGCTGTACCTGTGGGAACGG                                                             <  4:5508/149‑1
                                                                                                     CCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACG                                                              <  7:252798/132‑1
                                                                                                     CCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACG                                                              >  8:252798/1‑132
                                                                                                                                                     GGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACTGGGGTTGCTTTCCGCCTGGGGCTAAGCTTTACCTGTGGTAACGGGAAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGA  <  7:119924/144‑1
                                                                                                                                                                                                                                                                                                     
AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2099801‑2099957
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggccgctGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAGCGGCCCCCGCTTGGCGATCAACTGAAATGAACAGA  <  NC_002947/2100056‑2099921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.