New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2099957	39 (0.610)	8 (0.140)	6/234	NT	17.6%	intergenic (‑68/‑137)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100056	39 (0.660)					intergenic (‑167/‑38)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

TCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG  >  NC_002947/2099917‑2100202                                                                                                                                             |                                                                                                                                                   tttttgtgtTCATTTCTGTTTATCGCCACGGGGGGGCGGTTGGGCGCCCCTCGGGGGGCTTGCCGTTTCCCACTGTTACTGTTTCGCCCCTGGTTTAACGCACGCCGTGGGGGTGGGGCAAA‑GCCCGCGGAGGGGCGCGCAGCGGccc                                                                                                                                            <  8:119924/142‑1 (MQ=255)     tctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTTACCACAGGTAAAGCTTAGCCCCAGGCGGAAAGCAACCCCAGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggccc                                                                                                                                            <  7:119924‑M2/144‑9 (MQ=255)                              gggggggCGGCTTGGCGCCCCGCCGCGGGCTTGCCGGTTCCCACCGGTACCCCTTCCCCCCCGGCTCACGCCACGCCCTGGGGTCGGGGGAAC‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCa                                                                                                              <  6:198984/147‑1 (MQ=255)                                            gccccccTCCGCGGGCTTGCCCGTTCCCACAGGACAAGCTTACCCCCCGGCTCAACCAAACCCCTTTCGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATgg                                                                                                           <  7:388685/135‑1 (MQ=255)                                               ccctgcggcgGGGTTGCCTGTCCCCCCCGGTACCGTTTCCCCCCCGGCTCACCGCCCCCCGTGGGGGTG‑GGGCAACGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATc                                                                                             <  4:38681/142‑1 (MQ=255)                                                      gcgGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTc                                                                                      >  3:218424/1‑149 (MQ=255)                                                       cgGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCt                                                                                     >  6:207435/1‑149 (MQ=255)                                                            ttGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGAcc                                                                                >  1:296507/1‑149 (MQ=255)                                                                ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc                                                                            <  7:100053‑M2/149‑73 (MQ=255)                                                                ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc                                                                            <  2:274580‑M2/149‑73 (MQ=255)                                                                ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCgcgc                                                                            >  4:146602/1‑149 (MQ=255)                                                                ccGTTCCCACAGGTACAGCATAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagaccccccagcagccggggctattcggctatgc                                                                            <  4:5508‑M2/149‑73 (MQ=255)                                                                 cGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccgg                                                                                            <  7:252798‑M2/132‑57 (MQ=255)                                                                 cGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccgg                                                                                            >  8:252798‑M2/1‑76 (MQ=255)                                                                 cGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGcc                                                                           >  1:1470/1‑149 (MQ=255)                                                                     cccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgc                                                                        >  1:274580‑M2/1‑72 (MQ=255)                                                                      ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTgaga                                                                                                                              >  5:159663/1‑93 (MQ=255)                                                                      ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTgaga                                                                                                                              <  6:159663/93‑1 (MQ=255)                                                                      ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATc                                                                      >  7:123819/1‑149 (MQ=255)                                                                        acaGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCgg                                                                    <  8:123819/149‑1 (MQ=255)                                                                              aCAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTgg                                                              >  1:107994/1‑149 (MQ=255)                                                                               cAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgc                                                             >  1:15176/1‑149 (MQ=255)                                                                                aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg                                                                                    <  7:247623/125‑1 (MQ=255)                                                                                aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGAGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg                                                                                    >  8:247623/1‑125 (MQ=255)                                                                                    tAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgg                                                        >  3:5508‑M2/1‑57 (MQ=255)                                                                                      gCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCtt                                                      <  2:296507/149‑1 (MQ=255)                                                                                       ccccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgggaa                                                     >  8:100053‑M2/1‑54 (MQ=255)                                                                                       ccccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCtt                                                      >  5:380137/1‑148 (MQ=255)                                                                                         ccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGaa                                                   >  7:64530/1‑149 (MQ=255)                                                                                             gCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCACGCCGAAAAGGTCCTGGCTATCCTAGAAcca                                                >  6:288263/1‑147 (MQ=38)                                                                                                   cGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGc                                         >  1:383844/1‑149 (MQ=255)                                                                                                      aaGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCgg                                      >  3:32996/1‑149 (MQ=255)                                                                                                          ccTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGcaca                                  <  2:15176/149‑1 (MQ=255)                                                                                                           cTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACaa                                 >  5:207678/1‑149 (MQ=255)                                                                                                            tgtgGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAAc                                >  7:124236/1‑149 (MQ=255)                                                                                                                ggAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGccc                            <  4:32996/149‑1 (MQ=255)                                                                                                                  aGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCg                           >  3:272368/1‑148 (MQ=255)                                                                                                                   gCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGca                         >  3:323425/1‑149 (MQ=255)                                                                                                                     gggCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGcaca                       >  5:216762/1‑149 (MQ=255)                                                                                                                       gCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATc                     >  8:71277/1‑149 (MQ=255)                                                                                                                         aa‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGACTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAAACGGTACTGGCGCGCCTTGAACCCCTCATGCCGGCACAACGCCCGCACATcca                   >  8:343556/1‑147 (MQ=255)                                                                                                                            gCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc                                                  <  4:904/116‑1 (MQ=255)                                                                                                                            gCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc                                                  >  3:904/1‑116 (MQ=255)                                                                                                                              ccGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg               <  2:1470/149‑1 (MQ=255)                                                                                                                                   gAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGcac          <  7:343556/149‑1 (MQ=255)                                                                                                                                    aGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGcacc         <  6:216762/149‑1 (MQ=255)                                                                                                                                     ggggCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGa                                                                                  >  2:143646/1‑75 (MQ=255)                                                                                                                                     ggggCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGa                                                                                  <  1:143646/75‑1 (MQ=255)                                                                                                                                      gggCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGcacca        >  2:291110/1‑148 (MQ=255)                                                                                                                                         cgcgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg               <  7:116724/138‑1 (MQ=255)                                                                                                                                         cgcgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg               >  8:116724/1‑138 (MQ=255)                                                                                                                                          gcgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTg   <  7:71277/149‑1 (MQ=255)                                                                                                                                           cgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTgg  <  6:207678/149‑1 (MQ=255)                                                                                                                                           cgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTgg  <  8:124236/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   TCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG  >  NC_002947/2099917‑2100202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.