New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2971564	54 (0.840)	3 (0.050)	3/242	NT	5.5%	coding (1903/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	= 2971584	52 (0.850)					coding (1923/2391 nt)	PP_2599	chemotaxis sensory transducer family protein

GAACTACCGACAGAGGAGCCATTGCTGGCCGACCGCCCCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2971417‑2971564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcgGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGCAA  <  NC_002947/2971584‑2971438                                                                                                                                                                                                                                                                                                         GAACTACCGACAGAGGAGCCATTGCTGGCCGACCGCCCCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGC                                                                                                                                                      >  5:382212/1‑147                                    CCCCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGC                                                                                                                 <  2:6857/149‑1                                      CCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGCGGATCGACAGGTTGTACAGCTCGCCGTAG                                                                                                                         >  7:53880/1‑139                                      CCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGCGGATCGACAGGTTGTACAGCTCGCCGTAG                                                                                                                         <  8:53880/139‑1                                                                                                                                             tcagGGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGC        >  8:146595/5‑149                                                                                                                                               ACGGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCA      <  7:173460/149‑1                                                                                                                                               ACGGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGC        >  4:119737/1‑147                                                                                                                                                 GGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCG          >  1:387641/1‑143                                                                                                                                                 GGCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCG          <  2:387641/143‑1                                                                                                                                                  GCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGC    >  2:256447/1‑148                                                                                                                                                  GCGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGC    >  2:268334/1‑148                                                                                                                                                   CGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGCAA  <  5:107844/149‑1                                                                                                                                                   CGGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGCAA  <  7:146595/149‑1                                                                                                                                                                                                                                                                                                         GAACTACCGACAGAGGAGCCATTGCTGGCCGACCGCCCCGAGCACTGCGTGCCCTGGGGCACCCGCACGCCGCCGGTGGTGAAGGACGACCCGCGTAACATCTGGGGGTTCGACATGCATCTGCCAGGCCACGCCAGCAACTACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2971417‑2971564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcgGATCGACAGGTTGTACAGCTCGCCGTAGTTGCTGGCGTGGCCTGGCAGATGCATGTCGAACCCCCAGATGTTACGCGGGTCGTCCTTCACCACCGGCGGCGTGCGGGTGCCCCAGGGCACGCAGTGCTCGGGGCGGTCGGCCAGCAA  <  NC_002947/2971584‑2971438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.